Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01173 ATGGCGAAGAGTGAGTTGAAGCTGATTGGTAAATGGTCGAGTCCCTATGCGATGAGGGTGAAGATTGCCCTCAACATCAAATCCCTTGAACATGAACACTTTGAAGAAACCTTGAACCCCAAAAGCGACCTTCTTCTTCAGTCCAACCCTGTGTATGGCAAAGTACCAGTTCTCATCCACCATGGCAGACCCATCTGTGAGTCTTTGGTCATAGTTGAATACATAGATGAAACGTGGTCCACTGGTCCTTCTATACTTCCCTCTGATCCTTATGATAGAGCTGTTGCTCGTTTCTGGACTGCTTACATAGATGATAAGTGGTTTCCTTCCATGAAAAGCATTATAACTGTTGAAGGAGAGGAGGAAAGGAAGCCATACTTTGAGGTGTTGGAAGAAGTGCTTGAGAGGATGGAGGATGCTTTTTTGAAATGCAGCAAAGGAAAGCCCTTTTTTGCTGGAGACAGGATTGGATTCCTTGATATTGCTTTTGGGTGCTTCCTGGGATGGCTTAGTGTCATAGAGCATAGCTTGCAGGAGCATCCTCCAAGATCCTGCAGGAGACAAGATGATACCATCGAAGATTCGAACACAACAAGCTTGTACGAGGTTCAACGGAAAGTGAGGGCACCCCCTTCCTCCAAATCAAAGAGCGTGCAACAAGAGCTCGAACCCATCACGCTGAGGGTGAAGACTGCTCTCAACATCAAATCCCTCGAATATGAACACTTTGAAGAAAACTTGAACCCCAAAAGCCACCTTCTTCTTCAGTCCAACCCTGTGCATGGCAAAGTCCCAGTTCTCATCCACCATGACAGACCCATCTGCGAGTCTTTGGTCATAGATGAAACTTGGCCCACTGCTCCTTCTATCCTCCCCTCTCATCCTTATGATAGAGCCTTTGCTCGCTTCTGGGCTGCATACATAGACCATAAGTTACACTTGAGTTTCTGCTCTCTCCAGTCCTTTGTGATCTCCTGTCATTTGAGCTTCCTCCAGGCTCCAGCTGGAGATATGATATATGGGAAACCAAGAAATCTGAGTGTAACTTGTTGGCAGGTTCAGTCTCCATATAGAGATATTTGTCATCACCTAGAAGTCTACAACAAGTGA 1110 0.4577 MAKSELKLIGKWSSPYAMRVKIALNIKSLEHEHFEETLNPKSDLLLQSNPVYGKVPVLIHHGRPICESLVIVEYIDETWSTGPSILPSDPYDRAVARFWTAYIDDKWFPSMKSIITVEGEEERKPYFEVLEEVLERMEDAFLKCSKGKPFFAGDRIGFLDIAFGCFLGWLSVIEHSLQEHPPRSCRRQDDTIEDSNTTSLYEVQRKVRAPPSSKSKSVQQELEPITLRVKTALNIKSLEYEHFEENLNPKSHLLLQSNPVHGKVPVLIHHDRPICESLVIDETWPTAPSILPSHPYDRAFARFWAAYIDHKLHLSFCSLQSFVISCHLSFLQAPAGDMIYGKPRNLSVTCWQVQSPYRDICHHLEVYNK 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01173 369 Pfam Glutathione S-transferase, N-terminal domain 5 77 IPR004045 -
Pumo1g01173 369 Pfam Glutathione S-transferase, N-terminal domain 225 280 IPR004045 -
Pumo1g01173 369 SUPERFAMILY Thioredoxin-like 224 313 IPR036249 -
Pumo1g01173 369 Pfam Glutathione S-transferase, C-terminal domain 99 178 IPR004046 -
Pumo1g01173 369 SUPERFAMILY GST C-terminal domain-like 85 181 IPR036282 -
Pumo1g01173 369 Gene3D Glutaredoxin 1 85 - -
Pumo1g01173 369 Gene3D - 86 186 - -
Pumo1g01173 369 Gene3D - 291 325 - -
Pumo1g01173 369 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 4 83 IPR004045 -
Pumo1g01173 369 SUPERFAMILY Thioredoxin-like 6 108 IPR036249 -
Pumo1g01173 369 Gene3D Glutaredoxin 216 290 - -
Pumo1g01173 369 CDD GST_N_Tau 6 79 - -
Pumo1g01173 369 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 9 207 IPR045073 -
Pumo1g01173 369 CDD GST_C_Tau 90 174 IPR045074 GO:0004364|GO:0006749
Pumo1g01173 369 FunFam Glutathione S-transferase GSTU6 1 86 - -
Pumo1g01173 369 SFLD Main.3: Omega- and Tau-like 2 177 IPR045073 -
Pumo1g01173 369 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 213 292 IPR004045 -
Pumo1g01173 369 SFLD Glutathione Transferase (cytosolic) 2 177 IPR040079 -
Pumo1g01173 369 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 89 210 IPR010987 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01173 Pumo-Chr1 20011991 20016652 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01173 212 323 Glutathione S-transferase Gene Family AT1G10370 51.282 7.31e-31 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01173 K00799 - pxb:103950895 350.132