Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01168 ATGGGTGCAGGGGACTACTACAAGATCCTCAAAGTGAACCGCAATGCCACGGATGAGGAACTCAAGAGGGCATATAAGAGGTTGGCCATGAAGTGGCACCCAGATAAGAACCATCAGCACCACCATGTTACCAAAGAAGAAGCTGAGGCAAAGTTCAAGCAGGTTTCGGAGGCTTATGATGTTCTCAGCGACCCCAAGAAGCGCCAGATCTATGATTTCTATGGCCACTATCCCCTTAACTCCATGAAGGTGAATGAGGAGAATGGTGATGGGGATGTTAGGCTCCCCAAGGGGGAGAAAAAAGTTGTTGGGGTGGTTGAGAGCAAATTGGTGTGCACCCTTGAGGAGCTTTACAAAGGTTGCAAAAAAAAGTTGAAGATCTCAAGGACTGTTCCTGGTGAATTCGGTAAGTTGAAAACTGTGGAAGAGGTCTTGAAAATTGACATCAAACCTGGTTGGAAGAAAGGCACAAAAATAACATTTCCTGGGAAAGGCAACCAAGAAGCAGAAGCTACTGCTCCTGATGATCTAATCTTTGTGGTGGATGAAAAACCACATGCTTTGTTCAAGAGAGATGGAAATGATTTGGTTGTGACACAGAAAATCTTACTTGTGGAGGCCCTAGTGGGAAAGACTCTCAACTTGACAACCTTGGATGGAAGAGAGCTCACAATTGAAGTCACAGATGTTGTGAAACCGAAATATGTGATGGTGGTCCCAAATGAAGGAATGCCAATCTCAAAGGAACCTGGCAAGAAAGGAAACTTGAGAATCAAGTTTGATGTTATGTTCCCATCAAGGCTTACCTCACAGCAGAAGTATGAGCTGAAAAGGATTTTGAGCAACAGTACTGATGACTAA 861 0.4437 MGAGDYYKILKVNRNATDEELKRAYKRLAMKWHPDKNHQHHHVTKEEAEAKFKQVSEAYDVLSDPKKRQIYDFYGHYPLNSMKVNEENGDGDVRLPKGEKKVVGVVESKLVCTLEELYKGCKKKLKISRTVPGEFGKLKTVEEVLKIDIKPGWKKGTKITFPGKGNQEAEATAPDDLIFVVDEKPHALFKRDGNDLVVTQKILLVEALVGKTLNLTTLDGRELTIEVTDVVKPKYVMVVPNEGMPISKEPGKKGNLRIKFDVMFPSRLTSQQKYELKRILSNSTDD 286
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01168 286 SUPERFAMILY HSP40/DnaJ peptide-binding domain 189 273 IPR008971 GO:0006457|GO:0051082
Pumo1g01168 286 SUPERFAMILY Chaperone J-domain 4 81 IPR036869 -
Pumo1g01168 286 Gene3D DnaJ domain 2 92 IPR036869 -
Pumo1g01168 286 CDD DnaJ 5 64 IPR001623 -
Pumo1g01168 286 FunFam DnaJ-like subfamily B member 13 2 96 - -
Pumo1g01168 286 SUPERFAMILY HSP40/DnaJ peptide-binding domain 108 186 IPR008971 GO:0006457|GO:0051082
Pumo1g01168 286 Pfam DnaJ C terminal domain 106 265 IPR002939 -
Pumo1g01168 286 ProSiteProfiles dnaJ domain profile. 5 75 IPR001623 -
Pumo1g01168 286 Gene3D - 186 266 - -
Pumo1g01168 286 CDD DnaJ_C 106 268 - -
Pumo1g01168 286 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 280 - -
Pumo1g01168 286 FunFam DNAJ heat shock family protein 185 280 - -
Pumo1g01168 286 Pfam DnaJ domain 5 72 IPR001623 -
Pumo1g01168 286 Gene3D - 104 184 - -
Pumo1g01168 286 SMART dnaj_3 4 67 IPR001623 -
Pumo1g01168 286 ProSitePatterns Nt-dnaJ domain signature. 52 71 IPR018253 -
Pumo1g01168 286 PRINTS DnaJ domain signature 25 40 IPR001623 -
Pumo1g01168 286 PRINTS DnaJ domain signature 47 67 IPR001623 -
Pumo1g01168 286 PRINTS DnaJ domain signature 67 86 IPR001623 -
Pumo1g01168 286 PRINTS DnaJ domain signature 7 25 IPR001623 -
Pumo1g01168 286 FunFam Dnaj homolog subfamily b member 103 184 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Pumo1g01168 Pumo-Chr1 19914548 19917080 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01168 6 74 C2H2 Transcription Factor Family AT1G74250 37.681 3.14e-11 61.6
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01168 K09510 - gmx:100786068 530.791