Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01159 ATGGCTGGTGAGAAGCTTCATGGGGGTTCAAGCATGACACTTTTACTCCAAAAAGAAAGGCTTCCATGCTCCCCTGAGCTTATTCAATCTTTTTGGGTTCAAAACTCTGAACCTTCTTTTCAAGGTTCAAAATCCATGGCTAATGTTATGAGTGTCACGCATAGGCCCTTCTTTCAAGGTCTTGGGAAAGAAGAGAACCGTGACGATGAGGACTTTGAGGTGTGCCTCCATCAACCAGGTAAGAAAAGGAGGCTCACAAGCGAACAAGTTCAGTTCCTTGAAAGTAACTTCGAGGTAGAAAACAAGCTTGAACCCGAAAGGAAGGTCCAACTTGCAAAGGAACTTGGCATGCAACCAAGGCAAGTGGCCATATGGTTCCAAAACCGTAGGGCAAGGTTCAAGACCAAACAGCTTGAGAAAGACTATGGCATGTTGAAAGCTAGCTATGACATACTCAAAAGGGACTATGACAATCTCCTTCAGGAGAATGACAAGTTAAAGGAAGAGGTTAATTCTCTCAAGAGCAGATTGATTCCCAGAGAGGAAGAGGAACATAATATGGATGATACCTCCTGTGATGCTGTCAACTCACAACATAAAGAGCAGAATGATTTAATCATAAACACAGGTTCTGAAAATGGATCCAAAGTGCCACTTCCTGTTATGGTAATAAGCAAACAGGAAGATGCTAATTCAGCTAAAAGTGATGTGCTTGATTCTGAGAGCCCACATTTCACTGATGGAAACCAATCCTCACCCATGGAGCCTGCAGATTCCTCCCATGCTTTGGAACCAGACCACTCAGATTTCTCACAAGACGAGGAAGACATCCTCAGCCAAAACATCTTGACCTTGCCATTCTTACCAAAGGTTGAAGATGTCTGCTATGATGAACCACCTGAGAATTCTTGCAGTTTCAGGTTCCCAGTTGAAGATCAAACCTTCGATTTTTGGTCTTATTGA 963 0.432 MAGEKLHGGSSMTLLLQKERLPCSPELIQSFWVQNSEPSFQGSKSMANVMSVTHRPFFQGLGKEENRDDEDFEVCLHQPGKKRRLTSEQVQFLESNFEVENKLEPERKVQLAKELGMQPRQVAIWFQNRRARFKTKQLEKDYGMLKASYDILKRDYDNLLQENDKLKEEVNSLKSRLIPREEEEHNMDDTSCDAVNSQHKEQNDLIINTGSENGSKVPLPVMVISKQEDANSAKSDVLDSESPHFTDGNQSSPMEPADSSHALEPDHSDFSQDEEDILSQNILTLPFLPKVEDVCYDEPPENSCSFRFPVEDQTFDFWSY 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01159 320 Gene3D - 75 141 - -
Pumo1g01159 320 PRINTS Lambda-repressor HTH signature 116 132 IPR000047 GO:0003677
Pumo1g01159 320 PRINTS Lambda-repressor HTH signature 107 116 IPR000047 GO:0003677
Pumo1g01159 320 ProSitePatterns 'Homeobox' domain signature. 111 134 IPR017970 GO:0000981|GO:0006355
Pumo1g01159 320 Pfam Homeobox associated leucine zipper 136 177 IPR003106 GO:0006355|GO:0043565
Pumo1g01159 320 SUPERFAMILY Homeodomain-like 72 138 IPR009057 -
Pumo1g01159 320 MobiDBLite consensus disorder prediction 228 273 - -
Pumo1g01159 320 CDD homeodomain 79 137 IPR001356 GO:0003677
Pumo1g01159 320 FunFam Homeobox-leucine zipper protein HAT5 74 138 - -
Pumo1g01159 320 Pfam Homeodomain 81 134 IPR001356 GO:0003677
Pumo1g01159 320 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 59 241 IPR045224 GO:0003700
Pumo1g01159 320 MobiDBLite consensus disorder prediction 228 257 - -
Pumo1g01159 320 ProSiteProfiles 'Homeobox' domain profile. 76 136 IPR001356 GO:0003677
Pumo1g01159 320 Coils Coil 149 176 - -
Pumo1g01159 320 SMART HOX_1 78 140 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01159 Pumo-Chr1 19466994 19469397 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01159 31 182 Homeobox Transcription Factor Family AT3G01470 52.903 1.16e-44 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pumo1g01159 Homeodomain 7.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01159 - K09338 gmx:100804328 563.533