Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01151 ATGGCGAATTGCCAGAATTATTATTTTCTTTTGCTTTCTTTGGCACTTTTAATTCCTACCCTGAATGCCAATTTCTTAGAGAAAGATGAGTATTGGCAGAACCATGTCAACGAGTTTGATACATATTGGCAGGAAAGGCAAAAAGCCGCTAAAATAGACAGTCAGGCAGCTTATTTTCAAGATCCATATGCAGTTTCCGGCAACTTCACTTCTAGTGTTAGCGAAATCATAGTTGGGAAGAAGGAGTCACGAAGGAACTTGAGGGGGAAACATGGTGCAGGAGGTCCATGCATGGCCACCAACCCCATTGACAGGTGCTGGAGGTGTGACCCTAACTGGGCCAACGACCGCCAGAAGCTCGCAGATTGCGTTCAGGGCTTCGGCAGAAACACCGTCGGAGGCAAAGGTGGTCCATTCTACGTGGTCACCGACCCCTCAGACGACGAGTTGGTGGACCTAAAACCCGGTACCCTTCGCCACGCCGTTACCCGCGAAGGCCCACTGTGGATCATCTTTGCTCGCAGCATGTTCATCACCCTCCAGCAGGAGCTAATCATGAACAGCAACAAGACCATCGATGGAAGAGGCGTTGAGGTTTACATTGCCAATGGCGCCGGCATCACCGTGCAGTTTGTCAAGAACATCATCATCCACGGGATTAAGATCTACGACATCCAGGTTCGTGGGGGTGGAATGATCAGAGACTCTGAGAAGCATTATGGTCTGAGGACTCAGAGTGATGGTGATGGCATTTCCATCTTTGGTGCTAGCAATGTCTGGATTGATCATGTCTCCATGAGAAACTGCTCTGATGGACTCATTGATGCCATCATGGGTTCCACTGCTATTACCATCTCCAACAGCCATTTCACAGACCACAATGAGGTGATGTTGTTTGGTGCCAGTGACAGTTACGCTGATGATAAGATCATGCAAATCACTCTGGCATTCAACCACTTCGGCAAGAGATTAGTTCAAAGGATGCCCAGAGCCAGATATGGTTTTGTCCATGTGGTTAACAATGACTACACTCACTGGGAAATGTACGCCATTGGTGGTAGCAAGAACCCCACCATTATCAGTGAGGGTAACCGATTTATTGGCCCTGACAACCGATTCGCTAAAGAGATTACAAAGAGAGAATACACACCAGACAACGTATGGGCAAGTTGGCAATGGAGATCAATCAACGATGAGTACATGAATGGAGCATTTTTTGTGCAGTCTGGGCCTGAGCTGGTTAACAGACCATTCACAAGAGCAGACATGATCACAGCTAAGCCAGGGAGTTATGTGGGGAGGCTTACACGCTATTCTGGCAGCCTTAAGTGCAGAGTGGGTCGCCCTTGTTAA 1353 0.4812 MANCQNYYFLLLSLALLIPTLNANFLEKDEYWQNHVNEFDTYWQERQKAAKIDSQAAYFQDPYAVSGNFTSSVSEIIVGKKESRRNLRGKHGAGGPCMATNPIDRCWRCDPNWANDRQKLADCVQGFGRNTVGGKGGPFYVVTDPSDDELVDLKPGTLRHAVTREGPLWIIFARSMFITLQQELIMNSNKTIDGRGVEVYIANGAGITVQFVKNIIIHGIKIYDIQVRGGGMIRDSEKHYGLRTQSDGDGISIFGASNVWIDHVSMRNCSDGLIDAIMGSTAITISNSHFTDHNEVMLFGASDSYADDKIMQITLAFNHFGKRLVQRMPRARYGFVHVVNNDYTHWEMYAIGGSKNPTIISEGNRFIGPDNRFAKEITKREYTPDNVWASWQWRSINDEYMNGAFFVQSGPELVNRPFTRADMITAKPGSYVGRLTRYSGSLKCRVGRPC 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01151 450 PANTHER PECTATE LYASE 18-RELATED 54 448 IPR045032 GO:0030570
Pumo1g01151 450 SMART amb_all 175 372 IPR002022 -
Pumo1g01151 450 Gene3D - 100 443 IPR012334 -
Pumo1g01151 450 Pfam Pectate lyase 184 366 IPR002022 -
Pumo1g01151 450 Pfam Pectate lyase, N terminus 35 87 IPR007524 GO:0030570
Pumo1g01151 450 PRINTS Pollen allergen Amb family signature 183 199 IPR018082 -
Pumo1g01151 450 PRINTS Pollen allergen Amb family signature 391 415 IPR018082 -
Pumo1g01151 450 PRINTS Pollen allergen Amb family signature 349 368 IPR018082 -
Pumo1g01151 450 PRINTS Pollen allergen Amb family signature 421 444 IPR018082 -
Pumo1g01151 450 PRINTS Pollen allergen Amb family signature 147 172 IPR018082 -
Pumo1g01151 450 PRINTS Pollen allergen Amb family signature 123 140 IPR018082 -
Pumo1g01151 450 PRINTS Pollen allergen Amb family signature 247 268 IPR018082 -
Pumo1g01151 450 PRINTS Pollen allergen Amb family signature 327 346 IPR018082 -
Pumo1g01151 450 SUPERFAMILY Pectin lyase-like 101 440 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01151 Pumo-Chr1 19307503 19310066 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01151 3 450 Polysaccharide Lyase AT1G14420 58.065 0.0 533
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01151 K01728 - gmx:100798579 828.935