LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo1g01150	ATGGAGCTTGCACCTGTGAAGTCTGAACTAAGTCCAAGGAGCCATAGTTTGCTCATGATAGATGGTAGTGAGGTTATTGGCACTAAGTGTGTCAAAAGGCGGCGAAGAGATTCGTCTACGGTGGTGTTAGGTGGCACTGGACAACAAGGTGAACAGTTAGAAGAACAGAAGCAACTTGGTGGCCAAACAACTGCCACCACTGTGAAGAGAAGCTCAAGGTTCAGGGGTGTTAGCAGGCATCTAATTATATTCTTTCTGTGGAGCAGACACAGGTGGACTGGAAGGTTTGAAGCACATCTATGGGATAAAGGGACCTGGAATCCCACTCAGAAGAAGAAAGGAAAGCAAGGAGCTTATAATGATGAAGAAGCTGCTGCTAGAGCTTATGATTTGGCTGCACTCAAGTACTGGGGAACATCAACTTTCACAAATTTTCCTGTATCTGATTATGAGAAAGAAATAGAGATAATGAAAACTGTATCCAAAGAAGAATATCTTGCTTCATTGAGGAGGAGGAGCAGTGGTTTTTCCAGAGGTGTATCAAAGTATAGAGGAGTAGCAAGGCATCATCACAATGGAAGATGGGAAGCAAGGATTGGGAGAGTGTTCGGCAACAAGTACCTCTACCTTGGGACTTACAGTACACAAGAAGAAGCAGCTCGTGCATATGACATTGCAGCAATTGAATACAGAGGCATACATGCAGTGACAAACTTTGACTTGAGCACCTACATCAGATGGCTAAGACCAGGAACACATCCTACTGCTTCTCAAGATCAAAAGCCTAGCATTGATCCTCAACCCTTTGCAACCTCTAACTCCATGCAAACAAGAGGGAACATTGATGTATCCAACTCCAACATGCATTCATTCCCCTCAGGTGAATTGGACAGTACCAGGAAGCGAGACTTTTCCAAGTACATGAACCCTTTGAGTCCTTGCAACAAGCCATCTTCCCCAACAGCATTAGGACTTCTCCTAAAATCCTCAGTGTTTAGAGAACTGATGCAGAGAAATCTGAACTCTTCTAGTGAAGAAGCTGAAGAAGTTGAATTGAAATACCCACAAGAGGGCAATGATGGGGTTGGAGGGATTTATGATAATGACAACACCAGTAACTCTTACTTTTGCTCTTCTAATATCAGCAGATTACCTAACTTGGAGTCATCAGAAGAGAGTCCATTGCCTATGTATCATGGAACTGTGCAATCCCTATGGAATAGTGCTTTCAACATGTCTAACTGA	1245	0.4337	MELAPVKSELSPRSHSLLMIDGSEVIGTKCVKRRRRDSSTVVLGGTGQQGEQLEEQKQLGGQTTATTVKRSSRFRGVSRHLIIFFLWSRHRWTGRFEAHLWDKGTWNPTQKKKGKQGAYNDEEAAARAYDLAALKYWGTSTFTNFPVSDYEKEIEIMKTVSKEEYLASLRRRSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGIHAVTNFDLSTYIRWLRPGTHPTASQDQKPSIDPQPFATSNSMQTRGNIDVSNSNMHSFPSGELDSTRKRDFSKYMNPLSPCNKPSSPTALGLLLKSSVFRELMQRNLNSSSEEAEEVELKYPQEGNDGVGGIYDNDNTSNSYFCSSNISRLPNLESSEESPLPMYHGTVQSLWNSAFNMSN	414

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo1g01150	414	MobiDBLite	consensus disorder prediction	252	299	-	-
	Pumo1g01150	414	MobiDBLite	consensus disorder prediction	41	64	-	-
	Pumo1g01150	414	CDD	AP2	181	242	IPR001471	GO:0003700\|GO:0006355
	Pumo1g01150	414	ProSiteProfiles	AP2/ERF domain profile.	73	146	IPR001471	GO:0003700\|GO:0006355
	Pumo1g01150	414	Gene3D	AP2/ERF domain	72	148	IPR036955	GO:0003700\|GO:0006355
	Pumo1g01150	414	Gene3D	AP2/ERF domain	181	242	IPR036955	GO:0003700\|GO:0006355
	Pumo1g01150	414	MobiDBLite	consensus disorder prediction	253	294	-	-
	Pumo1g01150	414	FunFam	AP2-like ethylene-responsive transcription factor	181	242	-	-
	Pumo1g01150	414	PANTHER	AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR	55	312	-	-
	Pumo1g01150	414	SUPERFAMILY	DNA-binding domain	181	242	IPR016177	GO:0003677
	Pumo1g01150	414	SUPERFAMILY	DNA-binding domain	88	148	IPR016177	GO:0003677
	Pumo1g01150	414	Pfam	AP2 domain	181	232	IPR001471	GO:0003700\|GO:0006355
	Pumo1g01150	414	Coils	Coil	333	353	-	-
	Pumo1g01150	414	ProSiteProfiles	AP2/ERF domain profile.	182	240	IPR001471	GO:0003700\|GO:0006355
	Pumo1g01150	414	MobiDBLite	consensus disorder prediction	37	64	-	-
	Pumo1g01150	414	SMART	rav1_2	182	246	IPR001471	GO:0003700\|GO:0006355
	Pumo1g01150	414	SMART	rav1_2	73	152	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo1g01150	Pumo-Chr1	19301201	19303781	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo1g01150	69	263	AP2-EREBP Transcription Factor Family	AT5G57390	58.794	2.18e-74	237

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2 or ERF-ERF	Pumo1g01150		AP2	8.8e-12	CL0081

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo1g01150	-		-	gmx:100799621	740.725