Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01149 ATGTTTTTCTATCATTTCAGCAAGGCTAATTCTCATACACCAGAACCAAGGTCCTGGTTTGGTCCAAATGGACAGTATATCAGAGAGCTACCTTGTCCAAGTTGCCGGGGAAGGGGTTATACCCCTTGTACAGGTACAGAGTGTGGAATAGAAAGATCAAGGCCAGACTGTCCAAAATGTTATGGAAAGGGTATACTGACTTGCCACCAGTGCTCTGGAGATCGTGTTATATGGGAGGAATCAATTGATGAACAACCATGGGAGAGAGCCCGTTCTATTTCCCCACTTAAAGTAAAGGAAGATGATGAAGTTGACAAATTAGACATAAAGCTAGACGTGAAGAAAAAATCCAAGCGCGTCTACCAGTCACCACCACCAGAAGTAGGATTAAAGATTAGTCGTTCATTAAAAAGTCTCAATGCCAAAACTGGTCTATTTAGCAACCGAATGAAGATTATCCACCAGGATCCCAAGCTTCAGGCACAACGTGTAGCTGCTATTAAGAAAGCCAAGGGAACTGCTGCAGCAAGAAAGCATACTTCCAAAATTATGAAAGCTTACTTTAGTGATCCAATAAACCGTCAGAAAAGGAGCATGGCCATGAAGGGAGTGAAATTCTACTGCCAAAACTGTGGACGTGAAGGGCATAGGAGACACTATTGTCCAGAACTCAAGGATAGCTTGATTGATCGGCGATTCACGTGTAGGGTCTGTGGGGAAAAAGGCCACAACAGAAGAACATGTAGAAAGTTAAGGATAAGCCTTAGCGATGGGAGAACGATAAAACATCATCAGTGTACAGTATGTCGCCAATTCGGCCATAACCGCAGGACCTGCCCTCAAGCTGTTCCTTCTTTTGTTGTTCCTAGTAAAAGAAGGAACACGGCCTCTCAAAGACCATACAAATGTAGGTTGTGTAAGAAAGAGGGACATAATATTAGGACATGTCCAAGTAGGACAGTTGTTACTGAGCATCCTCAAGATTAA 987 0.4316 MFFYHFSKANSHTPEPRSWFGPNGQYIRELPCPSCRGRGYTPCTGTECGIERSRPDCPKCYGKGILTCHQCSGDRVIWEESIDEQPWERARSISPLKVKEDDEVDKLDIKLDVKKKSKRVYQSPPPEVGLKISRSLKSLNAKTGLFSNRMKIIHQDPKLQAQRVAAIKKAKGTAAARKHTSKIMKAYFSDPINRQKRSMAMKGVKFYCQNCGREGHRRHYCPELKDSLIDRRFTCRVCGEKGHNRRTCRKLRISLSDGRTIKHHQCTVCRQFGHNRRTCPQAVPSFVVPSKRRNTASQRPYKCRLCKKEGHNIRTCPSRTVVTEHPQD 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01149 328 Gene3D - 261 324 - -
Pumo1g01149 328 PANTHER ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN 262 318 - -
Pumo1g01149 328 ProSiteProfiles Zinc finger CCHC-type profile. 235 250 IPR001878 GO:0003676|GO:0008270
Pumo1g01149 328 ProSiteProfiles Zinc finger CCHC-type profile. 208 223 IPR001878 GO:0003676|GO:0008270
Pumo1g01149 328 SMART c2hcfinal6 207 223 IPR001878 GO:0003676|GO:0008270
Pumo1g01149 328 SMART c2hcfinal6 302 318 IPR001878 GO:0003676|GO:0008270
Pumo1g01149 328 SMART c2hcfinal6 234 250 IPR001878 GO:0003676|GO:0008270
Pumo1g01149 328 SMART c2hcfinal6 265 281 IPR001878 GO:0003676|GO:0008270
Pumo1g01149 328 Pfam Zinc knuckle 299 317 IPR025829 -
Pumo1g01149 328 Gene3D - 202 252 - -
Pumo1g01149 328 SUPERFAMILY Retrovirus zinc finger-like domains 205 251 IPR036875 GO:0003676|GO:0008270
Pumo1g01149 328 SUPERFAMILY Retrovirus zinc finger-like domains 259 319 IPR036875 GO:0003676|GO:0008270
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01149 15 321 C2H2 Transcription Factor Family AT5G20220 66.774 1.04e-147 420
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01149 - - gmx:100800156 610.142