Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01148 ATGTCGAACTTGCAGTTACACCTTCACTCTCCACCATCATCACTCTTATCATCTTCTTCTTCTTCTTCTTCTTCTCTTAAGCTACTCCCAAACCACTATTTCTCTCCAAAGTTCCTTCCTTTCAACACTCCTAAACCGTTCTCCCTCAGATGCCGCCACTCTGACCTCTTCGACCAGAACACCTTATCCTCCACACCACGACCCACAAGACCCTCCGCTTCAGTTGCAGCTTTGCCGCCTAGGGTTTATGTTGGTTACTCCATTTACAAAGGGAAGGCTGCGCTTACATTAACTCCTAGGCCCCCGGAATTTGTGCCACTCGATTCAGGGGCATACAAAATATCTAAGGAAGGTTATGTGCTGCTTCAGTTTGCACCAGCGGTTGGTACACGCCAGTATGATTGGAATAGAAAGCAGGTGTTTTCCTTATCAGTGGGTGAAATGGGAAGTGTGATGAGCCTTGGTGCAAGGGACTCTTGTGAATTTTTTCATGATCCTTTTAAGGGTAAAAGTGATGAAGGTAAAGTCAGAAAAATTTTGAAGGTGGAGCCTCTGCCAGATGGTTCTGGACACTTCTTTAACCTAAGTGTTCAAAACAAGCTTGTGAATGTGGATGAAAGCATCTATATCCCTATTACAAAAGCAGAGTTAGCAGTTTTGAGCTCAACTTTCAATTTTATCATGCCATACCTTCTGGGTTGGCATACCTTTGCAAACTCTATAAAGCCAGAAGATAATAGTGGAGTGAATAATGCCAACCCAAGATATGGAGGAGACTATGAATGGAACAGATAG 795 0.4365 MSNLQLHLHSPPSSLLSSSSSSSSSLKLLPNHYFSPKFLPFNTPKPFSLRCRHSDLFDQNTLSSTPRPTRPSASVAALPPRVYVGYSIYKGKAALTLTPRPPEFVPLDSGAYKISKEGYVLLQFAPAVGTRQYDWNRKQVFSLSVGEMGSVMSLGARDSCEFFHDPFKGKSDEGKVRKILKVEPLPDGSGHFFNLSVQNKLVNVDESIYIPITKAELAVLSSTFNFIMPYLLGWHTFANSIKPEDNSGVNNANPRYGGDYEWNR 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01148 264 MobiDBLite consensus disorder prediction 1 21 - -
Pumo1g01148 264 Gene3D Transcriptional Coactivator Pc4; Chain A 75 251 IPR009044 GO:0003677|GO:0006355
Pumo1g01148 264 Pfam Whirly transcription factor 88 222 IPR013742 GO:0003697|GO:0006355|GO:0006952
Pumo1g01148 264 FunFam Single-stranded DNA-binding protein WHY2, mitochondrial 73 248 - -
Pumo1g01148 264 SUPERFAMILY ssDNA-binding transcriptional regulator domain 80 264 IPR009044 GO:0003677|GO:0006355
Pumo1g01148 264 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 47 264 IPR013742 GO:0003697|GO:0006355|GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01148 Pumo-Chr1 19289555 19293426 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01148 43 264 Whirly Transcription Factor Family AT1G14410 71.111 4.93e-119 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Pumo1g01148 Whirly 1.7e-60 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01148 K26559 - gmx:100789252 454.136