Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01145 ATGGCATGTAGTTCTTCACTAAAATTTGTGGACATCTCACACAACCTTCTGGTTGGAAAATTACCATCCTGCTTTGGTTCAGTGTCTTCAAAGGGCACAGTACTATATTCTGGGAATTGTTTGTCAACCAAAAAAAGGTTAAATGATCAACAACATCCATTTTCTTTTTGCAAGAGAGAGGGGGCTTTGGCTGTTAAGCCTCCAGCTAAAAAGCTGAAGAAGGAAACGGATTCGGGTACGAAACTAGGCCTAATGCTTGGAATAATTGGAGGGATTGTAATAATTGGAGGACTTCTGGTTCTACTCATTGTGTTCATCCTTAGGAAGTCCAAAGCAGAAAGATCACCTCATAAAATGGACAAATCTGTTGCTAATAAATATTCTACCAGTGTATCTCCTAGACCAAATGGAACAAGACATATTCCTCAGGCAATGAAGCAAGCTGCACTTGGACTGCCACCATACCGTATTTTCACATCGGAGGAAATTGAAGATGCAACTAACAACTTTGACCCATCAAATTTAATAGAAGAGGGATCACAGGGACAGTTATATAAAGGTTGGCTCAGAGATGGTTCAGTGGTCCTTGTTAATTGTGTAAAAATAAGGCAGAAAGGTTTGCCCCACAGCATCATGCAGCAAATAGAGGTATTACCCAATTTGAGGCACAGACATATGGTGAGTGTTCTAGGACACTGTATCATTACTGAACAGGAGCATCCCCAAACAACAAGCACAGTCTTCATTGTATTTGAGTACATCTCAAATGTGTCATTGAGGGATCAACTTGCAGATGGGAGAAAGAGGGAAATGCTGAAATGGCCACAAAGAATGGCAATGAGCATAGGCATTGCAAGAGGAGTCCAGTTCTTACACACAGGAGTTGCTCCTGGCATATATGGCAACAATTTAAAGATTGAGAACATTCTGTTGGATGATAGTCTCAATGCAAAAGTCAGTAGATACAACATTCCATTGCCATCCAAGAGTGCACTTAATGGACAAACTGCCACCAATCATATTGGAAGCACAAATAATGCAGAAAAGGAAGATATCTATCAACTGGGTGTTATTCTACTTGAAGTTATCACTGGCAAACAAATTACATCCTCGAGTGAAATAGAGGAGCTGAAGGACGAGCTGGAGAATGGTTCATCAGAGGCAACATCAGTAATTAGAAGCGCAATTGATCCTTCACTGAGGGGAACTTATGCATATGAATCAATGAAGACTGCAGTTCAGATTACCATCAACTGTCTCTCCAAGGTTTCTAGCCAGCGCCCTTCAATAGAGGATGTTCTTTGGAATTTACAGTATGCAATGCAAGTTCAAGAGTCCTGGACCAGCAGTGGAAACCTCAGCACAAAATTGTAA 1374 0.409 MACSSSLKFVDISHNLLVGKLPSCFGSVSSKGTVLYSGNCLSTKKRLNDQQHPFSFCKREGALAVKPPAKKLKKETDSGTKLGLMLGIIGGIVIIGGLLVLLIVFILRKSKAERSPHKMDKSVANKYSTSVSPRPNGTRHIPQAMKQAALGLPPYRIFTSEEIEDATNNFDPSNLIEEGSQGQLYKGWLRDGSVVLVNCVKIRQKGLPHSIMQQIEVLPNLRHRHMVSVLGHCIITEQEHPQTTSTVFIVFEYISNVSLRDQLADGRKREMLKWPQRMAMSIGIARGVQFLHTGVAPGIYGNNLKIENILLDDSLNAKVSRYNIPLPSKSALNGQTATNHIGSTNNAEKEDIYQLGVILLEVITGKQITSSSEIEELKDELENGSSEATSVIRSAIDPSLRGTYAYESMKTAVQITINCLSKVSSQRPSIEDVLWNLQYAMQVQESWTSSGNLSTKL 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01145 457 ProSiteProfiles Protein kinase domain profile. 170 440 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo1g01145 457 SUPERFAMILY Protein kinase-like (PK-like) 151 438 IPR011009 -
Pumo1g01145 457 Gene3D Transferase(Phosphotransferase) domain 1 254 453 - -
Pumo1g01145 457 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 254 453 - -
Pumo1g01145 457 Gene3D Phosphorylase Kinase; domain 1 136 253 - -
Pumo1g01145 457 MobiDBLite consensus disorder prediction 117 139 - -
Pumo1g01145 457 FunFam Probable LRR receptor-like serine/threonine-protein kinase At2g02780 143 243 - -
Pumo1g01145 457 MobiDBLite consensus disorder prediction 122 137 - -
Pumo1g01145 457 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 87 446 - -
Pumo1g01145 457 Pfam Protein kinase domain 176 434 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01145 Pumo-Chr1 19260125 19262451 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01145 1 457 Miscellaneous Gene Families AT3G03770 41.542 8.57e-116 356
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-1 Pumo1g01145 Pkinase 6.1e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01145 - - gmx:100789785 808.905