Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01140 ATGGGTAACTGCCTAGATTCCTCAGCTAAAGTAGAAGCAGCTCACAGTTCCAGAACCCCTTCTGGAATATCAAAAACTAGTCCTTCATCTGTTCCTTCCAACTTATCTATTCTGTCACATAGTGAAGCAAGTGATTTCTCAAATCTTCCCACACCAAGGTCCGAGGGTGAAATCTTGTCTTCCCCAAATCTTAAGGCCTTTACCTTCACTGAGCTAAAGAATGCCACCAGAAACTTTCGCCCCGACAGCCTTCTTGGTGAAGGTGGATTTGGTTATGTTTACAAGGGGTGGATTGATGAACACACATTTACAGCTTCAAAACCTGGATCAGGAATGGTTGTTGCTGTTAAGAAACTCAAGCCTGAAGGGTTACAAGGTCATAAGGAGTGGTTGACTGAAGTGGACTACCTTGGGCAACTTCACCATCAGAATCTGGTAAAATTGATTGGATACTGTGCGGAGGGAGAGAACCGGCTGTTGGTATATGAGTTTATGTCCAAAGGGAGCTTAGAGAATCATCTGTTTAGAAGAGGACCACAACCTCTTTCTTGGTCAGTGAGGATGAAAGTGGCCATTGGTGCTGCCAGAGGACTTTCTTTTCTTCATAATGCCAAATCACAAGTCATATACCGTGATTTTAAAGCATCCAATATCCTACTAGACGCTGAGTTCAATGCTAAACTCTCTGATTTTGGCTTAGCAAAGGCTGGTCCTACGGGTGATAGAACACATGTCTCTACTCAAGTCATGGGAACTCAAGGATATGCAGCACCTGAATATGTTGCAACTGGTCGGCTGACGGCTAAAAGTGATGTATACAGCTTTGGAGTTGTGTTGCTGGAACTATTGTCCGGTAGACGTGCCGTTGACAGATCAAAAGCTGGTGTAGAGCAGAATCTAGTAGAATGGGCAAAACCATATTTGGGTGACAAAAGAAGACTATTTCGGATCATGGACACCAAGTTGGGAGGCCAATACCCACAAAAAGGAGCCTACATGGCTGCCACTCTTGCTCTAAAATGCCTTAATCGCGAAGCCAAGGCAAGGCCTCCAATGACAGAGGTTTTAGAAACTCTTGAACAGATTGCAGCCTCAAAAACTGCAGGAAGAAACTCCCAATTAGAACAGAAGAGAGTCCATGCTCCTGTCAGAAAGTCTAGTGTGCAAAAAGGGTCCCATTTGAATCATACTCCTACTTCATTACCATAA 1209 0.4409 MGNCLDSSAKVEAAHSSRTPSGISKTSPSSVPSNLSILSHSEASDFSNLPTPRSEGEILSSPNLKAFTFTELKNATRNFRPDSLLGEGGFGYVYKGWIDEHTFTASKPGSGMVVAVKKLKPEGLQGHKEWLTEVDYLGQLHHQNLVKLIGYCAEGENRLLVYEFMSKGSLENHLFRRGPQPLSWSVRMKVAIGAARGLSFLHNAKSQVIYRDFKASNILLDAEFNAKLSDFGLAKAGPTGDRTHVSTQVMGTQGYAAPEYVATGRLTAKSDVYSFGVVLLELLSGRRAVDRSKAGVEQNLVEWAKPYLGDKRRLFRIMDTKLGGQYPQKGAYMAATLALKCLNREAKARPPMTEVLETLEQIAASKTAGRNSQLEQKRVHAPVRKSSVQKGSHLNHTPTSLP 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01140 402 Gene3D Transferase(Phosphotransferase) domain 1 165 387 - -
Pumo1g01140 402 FunFam Serine/threonine-protein kinase BIK1 47 164 - -
Pumo1g01140 402 ProSitePatterns Protein kinases ATP-binding region signature. 85 118 IPR017441 GO:0005524
Pumo1g01140 402 Gene3D Phosphorylase Kinase; domain 1 55 164 - -
Pumo1g01140 402 Pfam Protein tyrosine and serine/threonine kinase 83 359 IPR001245 GO:0004672|GO:0006468
Pumo1g01140 402 ProSitePatterns Serine/Threonine protein kinases active-site signature. 208 220 IPR008271 GO:0004672|GO:0006468
Pumo1g01140 402 MobiDBLite consensus disorder prediction 1 34 - -
Pumo1g01140 402 SUPERFAMILY Protein kinase-like (PK-like) 54 359 IPR011009 -
Pumo1g01140 402 ProSiteProfiles Protein kinase domain profile. 79 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo1g01140 402 MobiDBLite consensus disorder prediction 10 34 - -
Pumo1g01140 402 MobiDBLite consensus disorder prediction 388 402 - -
Pumo1g01140 402 FunFam Probable serine/threonine-protein kinase PBL8 165 378 - -
Pumo1g01140 402 CDD STKc_IRAK 85 362 - -
Pumo1g01140 402 MobiDBLite consensus disorder prediction 366 402 - -
Pumo1g01140 402 PANTHER OS01G0588500 PROTEIN-RELATED 38 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01140 Pumo-Chr1 19151343 19154055 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01140 55 359 Glycoside Hydrolase AT3G07070 53.896 2.51e-114 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Pumo1g01140 PK_Tyr_Ser-Thr 6.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01140 - - gmx:100305401 789.26