Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01137 ATGATGCAAGATACGAAGCAGAAGTGCAATGGAGAATCTAAGAAGAAGGAGCGTCACATTGTGACTTGGACTCAAGAGGAGGATGATATACTAAGAGAGCAGATTGGTATTCATGGAACTGAAAATTGGGCAATTATTGCATCTAAGTTCAAAGACAAAACGACAAGACAGTGCAGAAGAAGATGGTACACTTACTTGAATTCTGATTTCAAGAAAGGTGGATGGTCAGCTGAGGAAGACATGCTCTTGTGTGAGGCTCAAAAAATATTTGGTAATAGATGGACAGAAATAGCAAAGGTGGTTTCAGGCAGAACGGATAATGCTGTGAAAAATCGTTTCTCCACACTCTGCAGGAAGAGACAAAAATATGCAGCTTTAGCAAAAGAGAACAGCACTTCATACATCAATTCAAATAACAAGAGGATGATGTTCCAACATTGTAATAATATGGATGCAACATCAGAATCTGGAGTACCTATTAAGAATTTGAGGATGGCCCATATCCCTGATGATGCAGAAAAGATCAAATTTGAGGACCGATCACATTTACGAAATGGAACTCCAATAAATCAGCAGCCAAGAGCACCATTTGCAGTATTAGCTCAAAACTCTCATAACTCAAACAACTTGCCAGACCAGCATCATATGATATTGGTTTATCATGCTTCTGCAGCCCAAAATAACAAGATTCAAGGAACATTTCTCAAAAAAGATGACCCAAAGATAAGTGCATTGATGCAACAGGCGGAGTTACTAAGTTCACTAGCTCTAAAAGTTGATACAGAGAACATGGACCAAAGTCTTGAAAATGCATGGAAGGTTCTTCAAGAGTATCTGAACCGAACCAAAGAATCAGATATCCCTGGACACAAGTTTCCAGATTTACGGCTTGAAGATCTTAAATATATGATTGAGGACTTGAAGAGTGGTAATGAGGAAGGCCAGGTACTTCAAGAGTTTCTGAACCGAACCAAAGAATCAGATATCCCTGGACATAAGATTCCACATTTACGGCTTGTAGATCTTAAAGATATGATTGAGGACTTGAAAAGTGGTAATGAGGAAGGCCAGGCTTGTTGGAGGCAAGTGGAACGTTATGAAGACTCTCCATGCAGTTCTGGATACAGTACAGGATCAATTCTCCTGTGTCAGCCAGCTGGTGATAATTTGGAGCATTCATTGCATCAGGATATTGGAACTGAAATGAAGTCTGAACAACTTGAAGATGAAAAAGGAGTAGGTAGAGATGAGAAAGTGGTTCCTGTCTACTGCAAATGTAGATCAAGATACGTTACCACATTGTGA 1305 0.3962 MMQDTKQKCNGESKKKERHIVTWTQEEDDILREQIGIHGTENWAIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSAEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCRKRQKYAALAKENSTSYINSNNKRMMFQHCNNMDATSESGVPIKNLRMAHIPDDAEKIKFEDRSHLRNGTPINQQPRAPFAVLAQNSHNSNNLPDQHHMILVYHASAAQNNKIQGTFLKKDDPKISALMQQAELLSSLALKVDTENMDQSLENAWKVLQEYLNRTKESDIPGHKFPDLRLEDLKYMIEDLKSGNEEGQVLQEFLNRTKESDIPGHKIPHLRLVDLKDMIEDLKSGNEEGQACWRQVERYEDSPCSSGYSTGSILLCQPAGDNLEHSLHQDIGTEMKSEQLEDEKGVGRDEKVVPVYCKCRSRYVTTL 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01137 434 ProSiteProfiles Myb-like domain profile. 23 66 IPR001005 -
Pumo1g01137 434 CDD SANT 22 66 IPR001005 -
Pumo1g01137 434 Pfam Myb-like DNA-binding domain 23 83 - -
Pumo1g01137 434 PANTHER MYB PROTEIN-RELATED 22 178 - -
Pumo1g01137 434 SMART sant 71 119 IPR001005 -
Pumo1g01137 434 SMART sant 19 68 IPR001005 -
Pumo1g01137 434 FunFam Transcription factor MYB124 15 71 - -
Pumo1g01137 434 SUPERFAMILY Homeodomain-like 19 113 IPR009057 -
Pumo1g01137 434 ProSiteProfiles Myb-like domain profile. 67 117 IPR001005 -
Pumo1g01137 434 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 70 IPR017930 -
Pumo1g01137 434 CDD SANT 75 116 IPR001005 -
Pumo1g01137 434 Gene3D - 12 71 - -
Pumo1g01137 434 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 71 121 IPR017930 -
Pumo1g01137 434 Gene3D - 74 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01137 Pumo-Chr1 19128154 19133376 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01137 12 320 MYB Transcription Factor Family AT2G02820 58.466 8.48e-126 366
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo1g01137 Myb_DNA-bind_6 1.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01137 K09422 - gmx:100803361 717.227