Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01136 ATGGCTTTCTTCCCAGCAAATTTCATGCTACAAACACCTCACCAAGATGACCATCAACCTCCACCTTCACTCAACTCAATTATAACTTCATGTGCACCTCAAGAGTACCATGGTACGCTCTATAGACCACAAAACACCAACCTAGTACTGCAATATTATATCATGGGGCCTAATACCAATGTTTCAAATGTTGATGCAGGAGGAGCATCCTTTCTAGGCAAGAGATCTATGTCATTTTCAGGGATTGAACTTGGAGAAGAAGCTAATGCTGAGGAAGATTTGTCTGATGATGGATCACAGGCAGGAGAGAAGAAAAGGAGGCTTAACATGGAACAAGTGAAGACACTTGAGAAGAGCTTTGAGTTGGGAAACAAGCTTGAACCTGAGAGGAAAATGCAGCTGGCAAGGGCTCTTGGCTTGCAGCCTAGACAGATTGCTATATGGTTCCAGAACAGGAGGGCTAGGTGGAAGACCAAGCAGTTGGAGAAGGACTATGATCTTCTCAAAAGACAATATGAAGCTATCAAGGCAGATAATGATGCACTTCAAGCTCAGAACCAAAAACTTCAGACTGAGATATTGGCACTGAAAAGCAGAGAACCAACTGAATCCATCAACCTCAATAAAGAAACTGAGGGATCCAGCAGCAACAGAAGTGAGAACAGCTCAGAAATCAAGTTGGCTATCTCAAGAACCCCAGCTATTGACAGTCCTCTATCCACTCAGCAGAACAGCAGAACCCTCTTTCCTCCATCTTCTGCTAGACCAACAGGAGTGTCTCAGCTTTTCCAAACCACTTCAAGGCCAGACCTTCAGTGCCAAAAGATTGATCACATGGTCAAAGAAGAGAGCTTAAGCAACATGTTTTGTGCCATTGATGATCAATCTGGCCTTTGGCCTTGGTTGGAGCAGCAGCATTTCAATTGA 927 0.4401 MAFFPANFMLQTPHQDDHQPPPSLNSIITSCAPQEYHGTLYRPQNTNLVLQYYIMGPNTNVSNVDAGGASFLGKRSMSFSGIELGEEANAEEDLSDDGSQAGEKKRRLNMEQVKTLEKSFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKRQYEAIKADNDALQAQNQKLQTEILALKSREPTESINLNKETEGSSSNRSENSSEIKLAISRTPAIDSPLSTQQNSRTLFPPSSARPTGVSQLFQTTSRPDLQCQKIDHMVKEESLSNMFCAIDDQSGLWPWLEQQHFN 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01136 308 Pfam Homeodomain 104 157 IPR001356 GO:0003677
Pumo1g01136 308 CDD homeodomain 104 160 IPR001356 GO:0003677
Pumo1g01136 308 SMART HOX_1 102 163 IPR001356 GO:0003677
Pumo1g01136 308 ProSiteProfiles 'Homeobox' domain profile. 99 159 IPR001356 GO:0003677
Pumo1g01136 308 MobiDBLite consensus disorder prediction 87 107 - -
Pumo1g01136 308 FunFam Homeobox-leucine zipper protein ATHB-13 96 163 - -
Pumo1g01136 308 PRINTS Lambda-repressor HTH signature 130 139 IPR000047 GO:0003677
Pumo1g01136 308 PRINTS Lambda-repressor HTH signature 139 155 IPR000047 GO:0003677
Pumo1g01136 308 MobiDBLite consensus disorder prediction 204 259 - -
Pumo1g01136 308 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 76 241 IPR045224 GO:0003700
Pumo1g01136 308 SUPERFAMILY Homeodomain-like 97 161 IPR009057 -
Pumo1g01136 308 MobiDBLite consensus disorder prediction 207 259 - -
Pumo1g01136 308 ProSitePatterns 'Homeobox' domain signature. 134 157 IPR017970 GO:0000981|GO:0006355
Pumo1g01136 308 Pfam Homeobox associated leucine zipper 159 199 IPR003106 GO:0006355|GO:0043565
Pumo1g01136 308 Coils Coil 151 199 - -
Pumo1g01136 308 Gene3D - 96 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01136 Pumo-Chr1 19094307 19097034 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01136 1 308 Homeobox Transcription Factor Family AT1G69780 58.025 1.45e-111 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pumo1g01136 Homeodomain 1.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01136 K09338 - gmx:100801479 505.753