Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01131 ATGAAAACTGCTCCTGGCGAGAGAGATATCGAGCAGGCAATTACATCTCTTAAGAAAGGCTCATATCTGCTGAAGTACGGGCGAAGAGGGAAGCCGAAGTTCTGCCCGTTTAGGCTTTCCAATGACGAGTCTCTACTCTTATGGTACTCTGGCAAGGAAGAGAAACAGATTAAGCTCAGTACGGTTTCAAGGATCATTCCTGGGCAGCGAACTGCAACATTTCAGCGGTATCCACGGCCTGAAAAGGAATATCAGTCATTTTCTCTTATATACAATGATAGGTCCTTGGATTTGATATGCAAGGACAAAGATGAAGCTGAAATCTGGTTTGTTGGTCTTAAGGCATTAGTTACTCGAGGTAACAATCGCAAGTGGAGATTTGAATCAAGAACTGACGACAGTCTGTGTTCTGATAGTCCAAAATCTGGCACACGAAGATCCACTCCATCAATTGCACCATTCTCTGAGGACCCTGGAGATGCTGGCGGAGGTGCTTTTGATTTGCAAAATAGATGGGTAAAGGCTTTCTCTGAAATAATTTCTTACACTGCAGCTAACAAGAGTTCCAGTCAAGCTGAATCACTTGCAAATTCCTCTTTATCCTCCGGGTCTGTGGATAACTCAAGCAATCGAAATTCTGCATCTGAGGGATTTCGAGTTAGTTTATCTAGTGCTGTAAGTTCCTCCAGCCAGGGTTCTTATCATGAAGATTTTGATTCCCTAGGTGATGTTTTTATTTGGGGAGAAGGTATTGGCGATGGAATTCTTGGTGGTGGTGTACATAGAGTTGGAGCCTTGTCTAGTTCTGAGATGGATGCATTCCTTCCCAAGGCATTGGAATCAAAGTTAGTTCTTGATGTTCATAGTATTGGTTGTGGCTACAGACATGCTGTTCTAGTTACCAAGCAGGGAGAGATATTTAGTTGGGGAGAGGAGTCAGGAGGTAGGCTTGGACATGGTGTAGAAATGGATGTTTTTCACCCTAAGCTCATTGACACTCTTGGTGGCATGAATATTGAATTAGTAGCATGTGGAGAATATCATACTTGTGCTGTTACTTATTCTGGGGATCTTTATACATGGGGTGATGGTACTCACAATTCTGGCATGCTTGGGCATGGAAATGAAGTCAGTCACTGGATTCCCAAGAAAGTCAGAGGTAACTTGGAGGGCTTACGTGTATCATATGTGTCCTGTGGACCTTGGCACACAGCTATTGTTACATCAGCTGGGCAGTTGTTCACATTTGGCGATGGAACTTTTGGTGCCTTAGGACATGGAGATCATAGTAGCACAAATATTCCTCGGGAAGTAGAAACTTTGAAAGGGTTGAGAACAACCAGGGTTGCCTGTGGTGTTTGGCACACTGCTGCAGTTGTTGAGGTGATAAATGAATCTGTGGAATCTTCTACACGCTCATCTAGTGGAAGACTGTTCACCTGGGGTGATGGAGATAAAAGCCAGCTCGGACATGCTAATAGGGAACCTAGACTAGTTCCCGAGTGTGTAAATGCATTGAGTACTGAAAACATTTGCCGAGTGGCTTGTGGCCACAGTCTTACAATTGCTTTGACCACGTCAGGACGTGTATACACAATGGGAAGTACAGCTTATGGACAACTTGGCTGTCCTGCATCTGATGGGAAAGTCCCTACACATGTCGAAGATAAAATTGCTGATAGTTTTGTAGAAGATATTGCCTGTGGTTCATATCATGTTGCAGTCTTGACTTCCAAGGCAGAGGTTTACACATGGGGAAAGGGTTTGAATGGGCAATTAGGTCATGGAGACAATGATCACAGGAATAAACCCACACTTGTTGAGTTCTTAAAAGATAAACAAGTGAAAAGTGTTTTTTGTGGTTCAAACTTTACTGCTGTTGTATGTCTTCATAAATGGATACCAAGTGTTGATCATTCTACGTGTTTTGGATGTCGCAATCCATTTAATTTCAGAAGAAAACGTCATAATTGTTACAACTGTGGACTTGTGTTTTGCAAATTGTGCACCAGCAAGAAATCTATAAAAGCTTCCCTTGCTCCCAATTCCAACAAGCTGTATCGAGTCTGTGATGACTGTTATCTTAAACTTAAGAAATCTGCTGAATCAGTACCCTTGGTGCAAACTCCTAGCTTGAGAAGTGTAAGTTTGCAAGACAATAGAACCAATAAAATACAGGGAACACTATTAAGGCTTGCATCTTTTGGTTCTATTGTTCAAACAGAAAGTAGTCAATCAAAGCTTCCAGATTCACAAGATAGTCATCTTTACCCAGCTTCGAATGGAAAATTACAGTTGAGGGGTTTTGCTCCTTCAAAATCATCAAATTCTCTTTCTGTCGATTCCAAGAAACACCTTTCAGTTTCTGATCCCGCTGCAAGAATATCTTGTCAATCAGCATCGCCAGTTTCATCAAAGTCAAGTCCAAGACAATCTTATGAAGATATCAATGACGATTTAAAGCACAGAAATGATATTTTAAGTCAAGAAGTTATTAGTTTAAGGACACAGGTTGAAGACCTTACTCGCAAGTCAAAAAGTTTAGAGGCTGAACTTGGGAGAACATCAAAGCAATTGAAGGAGGTGACTGCAGTAGCTGCAGATGAAGCTGGAAAGTGTAAATCAGCAAAAGAGGTCATAAAGTCATTGACTGCACAGTTGAAGGAAATGGTGGAAAGACTGCCAGATGGACATAATACTGACTCCAGTACAGAGCCCTTTGCTGAAACCACTAATAGTATTCTAGATCATTCCTTAGATGAGAGCCGTATAAGAAACACCGTCATTCCCAAAAATGAAGGTAGCAGCAATGTAGCAAATCTGATATTACCTAATGGTGCCAAAACACAAAGTGGAAAGGCAGAATGGGTAGTGCAAGATGAACCAGGTGTGTACGTAAGCTTGTCCTCACAGCCAGGTGGTGGTAATGAGCTTAAGCGTGTTCGCTTCAGTCGAAAGCATTTCACAGAAGAACAAGCTGAGAAGTGGTGGGCTGAAAATGGAACCAAAATATTGGAGCGGCACAATATAGTTGCTTTATAG 3042 0.4198 MKTAPGERDIEQAITSLKKGSYLLKYGRRGKPKFCPFRLSNDESLLLWYSGKEEKQIKLSTVSRIIPGQRTATFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAEIWFVGLKALVTRGNNRKWRFESRTDDSLCSDSPKSGTRRSTPSIAPFSEDPGDAGGGAFDLQNRWVKAFSEIISYTAANKSSSQAESLANSSLSSGSVDNSSNRNSASEGFRVSLSSAVSSSSQGSYHEDFDSLGDVFIWGEGIGDGILGGGVHRVGALSSSEMDAFLPKALESKLVLDVHSIGCGYRHAVLVTKQGEIFSWGEESGGRLGHGVEMDVFHPKLIDTLGGMNIELVACGEYHTCAVTYSGDLYTWGDGTHNSGMLGHGNEVSHWIPKKVRGNLEGLRVSYVSCGPWHTAIVTSAGQLFTFGDGTFGALGHGDHSSTNIPREVETLKGLRTTRVACGVWHTAAVVEVINESVESSTRSSSGRLFTWGDGDKSQLGHANREPRLVPECVNALSTENICRVACGHSLTIALTTSGRVYTMGSTAYGQLGCPASDGKVPTHVEDKIADSFVEDIACGSYHVAVLTSKAEVYTWGKGLNGQLGHGDNDHRNKPTLVEFLKDKQVKSVFCGSNFTAVVCLHKWIPSVDHSTCFGCRNPFNFRRKRHNCYNCGLVFCKLCTSKKSIKASLAPNSNKLYRVCDDCYLKLKKSAESVPLVQTPSLRSVSLQDNRTNKIQGTLLRLASFGSIVQTESSQSKLPDSQDSHLYPASNGKLQLRGFAPSKSSNSLSVDSKKHLSVSDPAARISCQSASPVSSKSSPRQSYEDINDDLKHRNDILSQEVISLRTQVEDLTRKSKSLEAELGRTSKQLKEVTAVAADEAGKCKSAKEVIKSLTAQLKEMVERLPDGHNTDSSTEPFAETTNSILDHSLDESRIRNTVIPKNEGSSNVANLILPNGAKTQSGKAEWVVQDEPGVYVSLSSQPGGGNELKRVRFSRKHFTEEQAEKWWAENGTKILERHNIVAL 1013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01131 1013 Pfam Regulator of chromosome condensation (RCC1) repeat 527 576 IPR000408 -
Pumo1g01131 1013 Pfam Regulator of chromosome condensation (RCC1) repeat 475 524 IPR000408 -
Pumo1g01131 1013 Pfam Regulator of chromosome condensation (RCC1) repeat 411 459 IPR000408 -
Pumo1g01131 1013 Pfam Regulator of chromosome condensation (RCC1) repeat 581 628 IPR000408 -
Pumo1g01131 1013 Pfam Regulator of chromosome condensation (RCC1) repeat 304 352 IPR000408 -
Pumo1g01131 1013 Pfam Regulator of chromosome condensation (RCC1) repeat 355 406 IPR000408 -
Pumo1g01131 1013 Pfam Pleckstrin homology domain 11 117 IPR001849 -
Pumo1g01131 1013 Coils Coil 873 893 - -
Pumo1g01131 1013 Coils Coil 810 858 - -
Pumo1g01131 1013 PRINTS Chromosome condensation regulator RCC1 signature 575 596 IPR000408 -
Pumo1g01131 1013 PRINTS Chromosome condensation regulator RCC1 signature 517 535 IPR000408 -
Pumo1g01131 1013 PRINTS Chromosome condensation regulator RCC1 signature 306 322 IPR000408 -
Pumo1g01131 1013 PRINTS Chromosome condensation regulator RCC1 signature 356 372 IPR000408 -
Pumo1g01131 1013 PRINTS Chromosome condensation regulator RCC1 signature 413 427 IPR000408 -
Pumo1g01131 1013 PRINTS Chromosome condensation regulator RCC1 signature 397 413 IPR000408 -
Pumo1g01131 1013 MobiDBLite consensus disorder prediction 136 151 - -
Pumo1g01131 1013 Pfam Transcription factor BRX N-terminal domain 868 896 IPR027988 -
Pumo1g01131 1013 ProSiteProfiles BRX domain profile. 954 1009 IPR013591 -
Pumo1g01131 1013 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 528 579 IPR000408 -
Pumo1g01131 1013 FunFam PH, RCC1 and FYVE domains-containing protein 1 213 464 - -
Pumo1g01131 1013 Pfam Transcription factor regulating root and shoot growth via Pin3 953 1008 IPR013591 -
Pumo1g01131 1013 SUPERFAMILY PH domain-like 9 117 - -
Pumo1g01131 1013 MobiDBLite consensus disorder prediction 129 161 - -
Pumo1g01131 1013 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 356 410 IPR000408 -
Pumo1g01131 1013 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 449 459 IPR000408 -
Pumo1g01131 1013 Pfam FYVE zinc finger 632 698 IPR000306 GO:0046872
Pumo1g01131 1013 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 53 888 - -
Pumo1g01131 1013 SUPERFAMILY RCC1/BLIP-II 240 633 IPR009091 -
Pumo1g01131 1013 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 580 631 IPR000408 -
Pumo1g01131 1013 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 411 462 IPR000408 -
Pumo1g01131 1013 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 304 355 IPR000408 -
Pumo1g01131 1013 Gene3D - 173 366 IPR009091 -
Pumo1g01131 1013 Gene3D - 367 466 IPR009091 -
Pumo1g01131 1013 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 639 705 IPR013083 -
Pumo1g01131 1013 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 636 698 IPR017455 -
Pumo1g01131 1013 Gene3D - 9 125 IPR011993 -
Pumo1g01131 1013 CDD FYVE_like_SF 641 694 - -
Pumo1g01131 1013 MobiDBLite consensus disorder prediction 771 820 - -
Pumo1g01131 1013 SUPERFAMILY FYVE/PHD zinc finger 632 707 IPR011011 -
Pumo1g01131 1013 CDD PH_PLC_plant-like 8 118 - -
Pumo1g01131 1013 Gene3D - 469 638 IPR009091 -
Pumo1g01131 1013 SMART fyve_4 628 699 IPR000306 GO:0046872
Pumo1g01131 1013 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 242 303 IPR000408 -
Pumo1g01131 1013 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 290 300 IPR000408 -
Pumo1g01131 1013 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 476 527 IPR000408 -
Pumo1g01131 1013 MobiDBLite consensus disorder prediction 792 811 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01131 Pumo-Chr1 18958267 18968265 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01131 870 1010 Major Intrinsic Protein MIP AT1G31880 29.885 2.08e-16 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01131 - - pvu:PHAVU_003G066900g 1519.21