Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01126 ATGGCAGATCGAGCTGTGATGATGGGAGAGTTACTGAAAGCGGCCATTGCAATGAACAAGGGTCGTCTGGATTTCAAACCCATCTTTGGGAGGAACAAAGAAATCTTAGACTCTCTGACTCCTCTTGTGGAAGAGATGAAACGGTACAACAACATGATGGATGCTGTTGGGAGCATGGTTTTAAACTGTGGTCCACGACCGCAATTGCGGCCTCAGCGAAAAGGGTGTTTTCTAACACGTCAGAACTGCATCTCCACCGTAATTGCGACTGCATCAGCCACATTTATCCGCAATTTCCCGCAACTACCCGCAATGCGACGAAACCGTGGCAACCGTGACTGCAATTTAAAATCACTTGGGAGCATTGACAGGACCGACGTCACGGTTAATGCAATAAGTTTTACTTGGACAGTGGACAGTGCGATAAGGAGTAGGACTCCGTCAACTTTGGGAGCATCCCCTGCCCATAGTTTTGCTTCCGTAGTGGACAGTGCAATAAGGAGTCCGACTGCGTCCGATTTGGGAACATCCCCTGTGCATGATTTTGCTTCGGTAGTGGACATGAGGACCACTTCTGCACGATTATCACAAGTTTCGAACGCAACGGAACATGTTGCTGCAAGATTCTTCACCCTGGCCGAGCTTGTGGCAGCAACCAACAATTTCTCACTTGACAACAAGATTGGTGTTGGTGAAGTGTACAGAGGCAAACTAGCTGATGGTGGTGAGGTCGCAATCAAGAGGGTAGAAACCTGGTTAAAGAGAAAGAGAATGAAGTCCGAATTGGCCTTCTTGTTCCGTTTACACCACAGGAACTTGGTTGGGCTGGTAGGGTTCTTCTGTGATGAGAAATACGAAAGGCTCTCCGTGTATGAGTACATGAAGAACGGGGCATTGTATGATCATTTGCATGACAAGAACAATGTGGAGAAAGGTAGCAGCGTGTTGAATTATTGGAAAATGAGGATCAAAATTGCTCTGGATGCTTCCCGGGGAATAGAATATCTTCATAACTACGCAGATCCATCTATTATCCACAGAAATATCAAGTCTTCCAATATTCTTCTTGATGCTACTTGGACTGCAAGAGTATCTGATTTTGAACTGTCGATGATGGTGAGTCCAGAAGAACCCGCCGACTGCGATTACCGCCCGATGAAGGCGGCGGGAACCATAGGATACATTGATCCTGAGTACTGTGGCCTAAATGTGTTGACAGCAAAGAGTGATGTGTATGGGCTTGGAGTTGTACTGCTTGAACTTCTAACCGGAAAGAGAGCGATTTTCAAGTCTGGGGAAGATGATGGCATTGGCACCCCATTAAGTGTGATAGAGTTTGCAGTGCCTGCTATTTTGGCTGGAGAATTGGGTAAAATTTTGGATCCTAGAGTTGGACCACCCGATGTGAATGAAGCAGAGGCAGTGGAGTTAGTTGCCCGTACCGCTATCCATTGTGTGAATTTCAAAGGGAAAGATAGACCAGCCATGGTTGACATAGTGATCAATTTGGAGCAGGCTTTGGCCATTTGTGATAGTAGCCATGATGCCATTTCTACTATAGTCCGAAAATATTGA 1575 0.4629 MADRAVMMGELLKAAIAMNKGRLDFKPIFGRNKEILDSLTPLVEEMKRYNNMMDAVGSMVLNCGPRPQLRPQRKGCFLTRQNCISTVIATASATFIRNFPQLPAMRRNRGNRDCNLKSLGSIDRTDVTVNAISFTWTVDSAIRSRTPSTLGASPAHSFASVVDSAIRSPTASDLGTSPVHDFASVVDMRTTSARLSQVSNATEHVAARFFTLAELVAATNNFSLDNKIGVGEVYRGKLADGGEVAIKRVETWLKRKRMKSELAFLFRLHHRNLVGLVGFFCDEKYERLSVYEYMKNGALYDHLHDKNNVEKGSSVLNYWKMRIKIALDASRGIEYLHNYADPSIIHRNIKSSNILLDATWTARVSDFELSMMVSPEEPADCDYRPMKAAGTIGYIDPEYCGLNVLTAKSDVYGLGVVLLELLTGKRAIFKSGEDDGIGTPLSVIEFAVPAILAGELGKILDPRVGPPDVNEAEAVELVARTAIHCVNFKGKDRPAMVDIVINLEQALAICDSSHDAISTIVRKY 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01126 524 Gene3D Phosphorylase Kinase; domain 1 181 293 - -
Pumo1g01126 524 SUPERFAMILY Protein kinase-like (PK-like) 199 503 IPR011009 -
Pumo1g01126 524 Gene3D Transferase(Phosphotransferase) domain 1 294 519 - -
Pumo1g01126 524 Pfam Protein kinase domain 230 431 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo1g01126 524 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 152 513 IPR044815 GO:0004674
Pumo1g01126 524 ProSiteProfiles Protein kinase domain profile. 222 517 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01126 Pumo-Chr1 18896205 18897907 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01126 185 519 Receptor kinase-like Gene Family AT3G55950 60.969 1.56e-122 377
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Pumo1g01126 Pkinase 4.4e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01126 - - vra:106757659 464.922