Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01109 ATGGCCCCAGGAAAGGTGAAACTTGCATTCATAGCCAATGATTCTAAAAGTAGGAAAGCATACAGGAAATGGAAGCAGTCACTGCTGAAGAAGACGGAGGAACTCAACACCCTTTGTGGCGTTGAAGCATGTGCTATAGTTTATGGTTCCGATGATACTCACCCAGAAGTTTGGTCATCTGAATTAAGTGTCCAAAATGTCCTGGGAAAGTTCAGGAGTATGACTGAATGGAAGCAACAGAGGAGAATGGTCAACCAAGAGAGTTTTATTGCACAAAAAATTGTGAAGGGTACACAAAAGCTGCAGAAAATTGTGAACAACAACGAAGAGAAACAGATGGCCTTATTCATGGCTCAGTGCTTTAAGACAGGAATGTTTGAGCCTTATAATACCATGACCACAGCTGATTTGAATGTTCTTTCATCGCTAATAGAACAAAACCTGAAGGATGTTAGTAGAAGGATGGAATTATTGAATCTCAACCAGGTAACATCGCCATCCCAACCCCCAATGCAAACACAAACAACATCCCAACCAAAGATCCAGACACCAGCACTTGATGAAGATATGACACTGCTGAATAATGGCAACGGGTTGGATATGAATGCTAACCCCATGCAAAGCCAGGGGCTTATGGACTTGCTTAATGGTAATGGGGATGAGACAATAGTGCCTCCATTTGGAGATGCTAACCTCCATCTCTAA 705 0.4241 MAPGKVKLAFIANDSKSRKAYRKWKQSLLKKTEELNTLCGVEACAIVYGSDDTHPEVWSSELSVQNVLGKFRSMTEWKQQRRMVNQESFIAQKIVKGTQKLQKIVNNNEEKQMALFMAQCFKTGMFEPYNTMTTADLNVLSSLIEQNLKDVSRRMELLNLNQVTSPSQPPMQTQTTSQPKIQTPALDEDMTLLNNGNGLDMNANPMQSQGLMDLLNGNGDETIVPPFGDANLHL 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01109 234 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Pumo1g01109 234 SUPERFAMILY SRF-like 4 94 IPR036879 GO:0003677|GO:0046983
Pumo1g01109 234 Gene3D - 14 96 IPR036879 GO:0003677|GO:0046983
Pumo1g01109 234 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Pumo1g01109 234 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pumo1g01109 234 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Pumo1g01109 234 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01109 Pumo-Chr1 18236180 18236884 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01109 1 158 Type I MADS-box Gene Family AT5G48670 45.570 1.22e-37 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pumo1g01109 SRF-TF 2.3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01109 - - gmx:100794935 260.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo1g01109 1 18236180 18236884 Pumo1g01109 1 18236180 18236884 ECH