Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01108 ATGGCCTCAGGAAAGATGAAACTTGCATTCATAGCCAACGATTCTAAAAGGAAGATAACATATAAGAAAAGGAAGCAGACAATGTTGAAGAAGGCGGAGGAACTCAGCACCTTCTGTGGTGTTGAAGCATGTGCTATAGTTTATGGCCCCGATGATCCTCAACCAGAAGTTTGGCCATCCAAATCGGGTGTCCAAAATGTGCTGGAAAAGTTCAGGAGTATGTCTGAATGGCAGCAAAACAAAAAACAGATGGATTAA 258 0.4225 MASGKMKLAFIANDSKRKITYKKRKQTMLKKAEELSTFCGVEACAIVYGPDDPQPEVWPSKSGVQNVLEKFRSMSEWQQNKKQMD 85
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01108 85 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
Pumo1g01108 85 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Pumo1g01108 85 PANTHER MADS BOX PROTEIN 5 82 - -
Pumo1g01108 85 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pumo1g01108 85 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pumo1g01108 85 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pumo1g01108 85 FunFam agamous-like MADS-box protein AGL80 13 85 - -
Pumo1g01108 85 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Pumo1g01108 85 CDD MADS_SRF_like 5 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Pumo1g01108 85 SUPERFAMILY SRF-like 1 85 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01108 Pumo-Chr1 18225226 18225483 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01108 1 85 Type I MADS-box Gene Family AT5G48670 57.647 6.83e-27 98.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pumo1g01108 SRF-TF 4e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01108 - - gmx:100794935 132.109
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo1g01108 1 18225226 18225483 Pumo1g01108 1 18225226 18225483 ECH