Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01107 ATGAATATTAGTTTATACAAAGTTATTGTTGGTGGCAGTAGAAACCATAAGCAACTGTGTTTCTCCCTTCACTTCTCATTTTGTCTCCCTTTTTTTCTAGTCACCATCATGGCTCGGAAAAAGGTGAAACTTGCATTCATAGCCAACCATACTAAGAGGAAAACAACATTCAGGAAAAGGAAGCAGTCACTGCTGAACTTGACGGAGGAACTCAACACCCTTTGTGGCATTGAAGCGTGTGCTATAGTTTATGGCCACGATGATCCTGAGCCAGAGACTTGGCCATCTGAACTGGGTGTCCAAAATGTGCTAGAAAAGTTCAGGAGAAAGTTTCGGCTTGGTAATAACATGATCATTGCTGATTTGAATGTTCTTTCGTCATTGATTGAACAAAACCTGGAGGACATTAGTAGAAGGATGGAAATGTTGATTGTCAACTAG 441 0.4059 MNISLYKVIVGGSRNHKQLCFSLHFSFCLPFFLVTIMARKKVKLAFIANHTKRKTTFRKRKQSLLNLTEELNTLCGIEACAIVYGHDDPEPETWPSELGVQNVLEKFRRKFRLGNNMIIADLNVLSSLIEQNLEDISRRMEMLIVN 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01107 146 CDD MADS_SRF_like 38 110 IPR033897 GO:0000981|GO:0000987|GO:0045944
Pumo1g01107 146 SMART madsneu2 37 96 IPR002100 GO:0003677|GO:0046983
Pumo1g01107 146 SUPERFAMILY SRF-like 37 110 IPR036879 GO:0003677|GO:0046983
Pumo1g01107 146 Gene3D - 50 109 IPR036879 GO:0003677|GO:0046983
Pumo1g01107 146 PRINTS MADS domain signature 59 74 IPR002100 GO:0003677|GO:0046983
Pumo1g01107 146 PRINTS MADS domain signature 39 59 IPR002100 GO:0003677|GO:0046983
Pumo1g01107 146 ProSiteProfiles MADS-box domain profile. 37 85 IPR002100 GO:0003677|GO:0046983
Pumo1g01107 146 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 46 87 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01107 Pumo-Chr1 18210902 18211495 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01107 37 143 Type I MADS-box Gene Family AT5G48670 38.462 6.92e-22 87.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pumo1g01107 SRF-TF 1.5e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01107 - - gmx:100794935 124.79