Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01105 ATGACTAGGAAAAAGGTGAAACTTGCATTCATTACAAATGATTCTGCAAGGAAGTTGACATACAAGAAAAGGAAGAAGGGAATGCTGAAGAAGATTGAGGAACTCAGCACCCTTTGTGGCATTGATGCATGTGCTATAGTTTATAGCCCAAATGATCTTGAACCAGAGGTTTGGCCATCCCATTGGGGTGTGCATAGGGTGTTGGGAAAGTTCATGACTATGCCCAAATTGGAGCAAAATAAGAAGATGGTGAATCAAGAGAGTTTCATTGAACAAATGATCCTGAAAGGTAAGGAGCAAATGATAAAACTTATGAAGGACAATAGGGAGAAGGAGATGACCATGTTCATGTTTCAGTGCCTTAATGGAGGTAAGGTTCATCCTGATAATAACATGGCCGCGGTTGATTTGAATGTTCTTTCATCCGTGATTGAACAGAATCTGAAGGACGTTTGTAAAAGGATGGAAAATCTGAAAGTTAATGAGGTGACAGTACCAAATGATCAACCCCAGATGCAAACTCCAGCATTAATGGCAATACCCAAGAATGAAGAAATGACACCACTGAATTATGGCCATGGGTCAGATATGAATGCTGGCCCAATGCAAAGCCAGTGGTTTATGGACTTGCTTAATGGTAATATTGGGGATGAGACAATAATGCCTCCATTTGGAGATGCTAATCTACAACTCCAAACTGGCTTTTGGTCAAATCTGTTACCTTGA 726 0.405 MTRKKVKLAFITNDSARKLTYKKRKKGMLKKIEELSTLCGIDACAIVYSPNDLEPEVWPSHWGVHRVLGKFMTMPKLEQNKKMVNQESFIEQMILKGKEQMIKLMKDNREKEMTMFMFQCLNGGKVHPDNNMAAVDLNVLSSVIEQNLKDVCKRMENLKVNEVTVPNDQPQMQTPALMAIPKNEEMTPLNYGHGSDMNAGPMQSQWFMDLLNGNIGDETIMPPFGDANLQLQTGFWSNLLP 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01105 241 SUPERFAMILY SRF-like 2 94 IPR036879 GO:0003677|GO:0046983
Pumo1g01105 241 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pumo1g01105 241 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pumo1g01105 241 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pumo1g01105 241 PANTHER MADS BOX PROTEIN 3 155 - -
Pumo1g01105 241 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pumo1g01105 241 Gene3D - 13 95 IPR036879 GO:0003677|GO:0046983
Pumo1g01105 241 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 52 IPR002100 GO:0003677|GO:0046983
Pumo1g01105 241 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Pumo1g01105 241 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Pumo1g01105 241 ProSiteProfiles MADS-box domain profile. 1 51 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01105 Pumo-Chr1 17849071 17849796 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01105 1 159 Type I MADS-box Gene Family AT5G48670 59.119 5.31e-52 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pumo1g01105 SRF-TF 2.9e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01105 - - gmx:106797065 343.969