Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pumo1g01103 | ATGACCAGGAAAAAGGTGAAACTCACATTCATAACCAATGATTCTGCAAGGAGGGCAACATACAAGAAAAGGAAGAAGGGAGTGTTGAAGAAGGTTGAAGAACTCAGCACCCTTTGTGGCATTGAAGCATGTGCTATAGTTTATAGCCACCATGATCCTGAGCCAGAGGTTTGGCCATCCCATTGGGGTGTCCAAAGGGTGGTGGAAAAGCTCAGGACTATGCCTGAATTGGAGCAAAGCAAGAAGATGGTGAACCAAGAGGGTTTCATTGGACAAAGGATCCTAAAGAGTAACAAGCAGATGATGAAACTTATGAAGGACAATAAGGAGAAGGAGATGACCTTGTTCATGTTTCAGTGCCTCAATAATGCAGGGATGCTTCAGCCTGATAATAACATGACCTACAGCTGA | 411 | 0.4404 | MTRKKVKLTFITNDSARRATYKKRKKGVLKKVEELSTLCGIEACAIVYSHHDPEPEVWPSHWGVQRVVEKLRTMPELEQSKKMVNQEGFIGQRILKSNKQMMKLMKDNKEKEMTLFMFQCLNNAGMLQPDNNMTYS | 136 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pumo1g01103 | 136 | Gene3D | - | 13 | 92 | IPR036879 | GO:0003677|GO:0046983 | |
Pumo1g01103 | 136 | ProSiteProfiles | MADS-box domain profile. | 1 | 49 | IPR002100 | GO:0003677|GO:0046983 | |
Pumo1g01103 | 136 | PANTHER | MADS BOX PROTEIN | 3 | 110 | - | - | |
Pumo1g01103 | 136 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 51 | IPR002100 | GO:0003677|GO:0046983 | |
Pumo1g01103 | 136 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677|GO:0046983 | |
Pumo1g01103 | 136 | CDD | MADS_SRF_like | 2 | 85 | IPR033897 | GO:0000981|GO:0000987|GO:0045944 | |
Pumo1g01103 | 136 | SUPERFAMILY | SRF-like | 2 | 94 | IPR036879 | GO:0003677|GO:0046983 | |
Pumo1g01103 | 136 | FunFam | agamous-like MADS-box protein AGL80 | 13 | 97 | - | - | |
Pumo1g01103 | 136 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677|GO:0046983 | |
Pumo1g01103 | 136 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677|GO:0046983 | |
Pumo1g01103 | 136 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677|GO:0046983 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pumo1g01103 | Pumo-Chr1 | 17838262 | 17838672 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pumo1g01103 | 1 | 121 | Type I MADS-box Gene Family | AT5G48670 | 65.289 | 1.06e-47 | 154 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | MADS-M-type | Pumo1g01103 | SRF-TF | 3.1e-17 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pumo1g01103 | - | - | gmx:106797065 | 231.106 |