Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01097 ATGACACAGCAACCATGTTCCTCTTCTTCCACCTGTGAATGGACTTATGATGTGTTCCTCAGTTTTAGAGGCAGTGATACTCGAAATGGCTTCACTGGCCACCTTTATAGATCTCTTTGTGAGAGGGGAATCTACACCTTCAAAGATGATGAGGAGCTTAGAAGGGGGGAAGAGATTAGACCAACTCTTTTCAAGGCAATTGAGCAATCTAGAAATGCCATCGTTGTTTTCTCTGAAAACTATGCTTCCTCAACTTATTGTCTTGAAGAACTTGTCACAATCCTTGACTGCATAATGAAAAAGGGTGGATTGGTTTGGCCAGTTTTTTATGGGGTGACTCCAGCTCACGTGCGGTATCAGCAAGGTTCTTATAGAGAAGCATTGGCTAAGCATGAAGAAAGATGCAAGAATGACAAGGAGAAGCTGCAAAAGTGGAAGCTAGCTCTACAAAAAGCTGCTGATTTGTATGGTTGGCATTTCAAATTAGAAGACGGGCCCGAAGATCAATTTATTCAGACAATTCTTGAAGAGGCGTCCAAAAGGATAAAATGTAGCCCTTTACATGTGGCTATGCATCCAATTGGATTGGACTCTAGAGTGCAAAAGGTGAGCTCACTTTTGGACATTGGATCCAATCAAAGAGTAAGCATGGTTGGGATTTATGGAATGGGGGGAATAGGTAAAACCACAATCGCATGTGCAGTGTATAACTCCATTGCTAATCAATTTGAAGGAAAGTGTTTTCTTGCTGATATTAGAGAAAATTCAATGAAGTATGGGTTAGTACAACTTCAGGAGACAATACTTTCTGAAATGGTTTGGGAGAAGAGTATCAAATTGGGGAGTATTAATAGGGGAGTGACAGAATTGAAAAGAAAGCTTCAAGGGAAGAAAGTTCTTTTGATTCTTGATGATGTTGATGAATTGAAGCAATTAAATGCACTTGCTGGAGATCTTTCTTGGTTTGGTTATGGCAGCAAAATCATTGTCACGACAAGGGATAAGCATTTGCTACAAACACATGGTGTTGAAAGGACATACGAGGCGCAAGGATTAGATCATAAAGAAGCTCTTGAGTTGTTTAGTTGGCATGCTTTTAAAAACAAGGTTGATCCTAGTTTCGTGGATGTCTCAAAGCGTGCAATACTTTATTCCAATGGCCTTCCATTGGCTTTGGAAATAATAGGTTCTGACTTAAATGGTAAAACAATGTCTGAATGGAAAGCAGCATTAGATACCTATGAAAAAATTCCAGATAAGATATTCATCAAAAACTAA 1278 0.3936 MTQQPCSSSSTCEWTYDVFLSFRGSDTRNGFTGHLYRSLCERGIYTFKDDEELRRGEEIRPTLFKAIEQSRNAIVVFSENYASSTYCLEELVTILDCIMKKGGLVWPVFYGVTPAHVRYQQGSYREALAKHEERCKNDKEKLQKWKLALQKAADLYGWHFKLEDGPEDQFIQTILEEASKRIKCSPLHVAMHPIGLDSRVQKVSSLLDIGSNQRVSMVGIYGMGGIGKTTIACAVYNSIANQFEGKCFLADIRENSMKYGLVQLQETILSEMVWEKSIKLGSINRGVTELKRKLQGKKVLLILDDVDELKQLNALAGDLSWFGYGSKIIVTTRDKHLLQTHGVERTYEAQGLDHKEALELFSWHAFKNKVDPSFVDVSKRAILYSNGLPLALEIIGSDLNGKTMSEWKAALDTYEKIPDKIFIKN 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01097 425 SMART till_3 15 155 IPR000157 GO:0007165
Pumo1g01097 425 Gene3D - 181 345 IPR027417 -
Pumo1g01097 425 Pfam NB-ARC domain 199 415 IPR002182 GO:0043531
Pumo1g01097 425 SUPERFAMILY Toll/Interleukin receptor TIR domain 6 158 IPR035897 -
Pumo1g01097 425 Coils Coil 128 148 - -
Pumo1g01097 425 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 181 419 IPR027417 -
Pumo1g01097 425 FunFam Disease resistance protein (TIR-NBS-LRR class) 12 184 - -
Pumo1g01097 425 Gene3D - 351 425 IPR042197 -
Pumo1g01097 425 ProSiteProfiles TIR domain profile. 14 182 IPR000157 GO:0007165
Pumo1g01097 425 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 16 417 IPR044974 GO:0006952
Pumo1g01097 425 Pfam TIR domain 16 178 IPR000157 GO:0007165
Pumo1g01097 425 Gene3D - 8 180 IPR035897 -
Pumo1g01097 425 PRINTS Disease resistance protein signature 385 399 - -
Pumo1g01097 425 PRINTS Disease resistance protein signature 217 232 - -
Pumo1g01097 425 PRINTS Disease resistance protein signature 293 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01097 Pumo-Chr1 17506754 17508543 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01097 16 397 WRKY Transcription Factor Family AT4G12020 30.052 1.25e-39 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01097 - - aprc:113858280 643.654