Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01094 ATGGACGATGAGGGGCTCAGAAGAGGGGAAGAGATTAGACCTGCTCTTTTCAGGGCAATTGAGCAGTCTAGAATTGCCATTGTTGTTTTCTCTGAAAACTATGCTTCCTCAACTTATTGTCTTGAAGAGCTTGTCATGATCCTTGACTGCATAATGAAAAAGGGTCGACTGGTTTGGCCAGTTTTTTATGGGGTGACTCCGTCTTGTGTGCGGAATCAGCAAGGTTCTTATGGGGAAGCATTGGCCAAGCTTGGAGAAAGATTCAAGGATGACATGGAGAAGCTGCAAAAATGGAAGGTTGCTCTACAGGAAGCAGCTAACTTGTCTGGTTCATATTTCAAACTCAAACATGGGTATGAACATGAACTTATTCAGACAATTGTTGAAGAGGTGTCCAAAAAGATAAATCGTAGCCCTTTACATGTGGCTAATTATCCAGTTGGGTTGGAGTCTAGAGTGCAAGAGGTGAACTCACTTTTGGATGTTGGATCCAATCAAGGAGTAAGCATGGTTGGGATTTATGGAATTGGGGGAATAGGTAAGACCGCAATCGCGTGTGCGGTGTACAATGCCATTGCTGATCAATTTGAAGGTCAGTGTTTCCTTGGTGATATTAGAGAAAAATCAATGAAGAATGGCTTAGTACAACTTCAGGAGACAATACTTTCTGAAATGGTTGGGGAGAAGAGTATCAAATTGGGGAGTATTTATAGTGGAATGTCAGTATTGAAAAACAAGCTTCAACGAAAGAAAGTCCTGTTGATTCTTGATGATGTTGATAGATTGGAGCAATTAAAGGCGCTTGCTGGTGATCATTCCTGGTTTGGTCATGGCAGCAAAATCATTGTCACGACAACGAATAAGCATTTGTTACGTGTACATGGTGTCGAAAGAAGATACGAAGCAAAAGGATTAGATGACAAAGAAGCTCTTGAGTTGTTTAGTTGGCATGCTTTTAAAAGCAATGAGGTTAGTCCAAGTTACATGGATATCTCTAAGCGTGCAGTACTTTATTCCAATGGCCATCCATTGGCTTTGGAGATAATAGGTTCTAACTTAAATGGTAAAACAATGTCTGAATGGCAAGCAGCATTAGATACCATTGAAAGAATTCCAGATGAAGATATTCAGGAAAAACTAAAAGTTAGCTATGATGGTTTGAAAGGAAATGAGAAGGAAGTTTTCCTTGACATCGCTTGTTTCTTCAGAGGCTACGATTTGAAAGATGTCACAAGTTTATTGCTCCAAGGTCGTGGTTTCTCACCAGAGTATGTTATTCGAGTGTTGATTGATAAATCTCTCATAAAGATCGATCAATATGGTTTTGTGAGAATGCATAACTTGGTAGAGAACATGGGCAGAGAAATTGTTAGGCAGGAATCACCATCAGAACCTGGAAAACGCAGTAGATTATGGCTTTATGAGGATATTGTTGATGTTTTAGAAAATGACAAGGGAACTGATACAATTGAAGTACTCATGCTACACTTGCCAAAGAATAAGGAAGTTCGATGGAATGGAAGTGAGCTCAAGAAGATGACAAACCTAAAATTACTATCTATTGAGAATGCTCACTTTTCTAGAGGCCCTGAACATCTCCCAAATAGTTTGAGAGTACTAAAGTGGTGGGGATATCCTTCACCGTCTTTGCCACCTGAATTTGATCCAAGGAGACTTGTTATGTTAGACTTGTCTAAGAGTTGCAATATATTGGGCAAACAACTCAAACTCATGAAGTTCGAGTCCTTGAGTGAAATGGTTTTAAGAGGTTGCAGATTCATAAAACAGGCACCTGACATGTCTGGAGCCCAAAATTTAAGGAAGCTATGTCTTGATAACTGCAAGAATTTAGTAGAAGTTCATGATTCCATCGGGCTTCTTGACAAACTTACATGGTTCAGTGCTATTGGATGCACCAATCTAAGGAGTCTTCCCCGTAGCTTCAAGTTAACATCACTTGAATATCTGTCTCTCAGAAAATGCTCAAGTCTACAGTGTTTGCCAAATATATTAGAGGAAATGGAACATATAAAAAATCTTGATCTGTGTAGCACTGCTATTAAAGAATTGCCATTTTCATTTAGGAAACTCACTGGGCTTAAATATCTAGTGCTGGACAAGTGCAAGATGCTTAATCAGATCCCAATAAGCATTTTGATGTTACCAAAACTTGAGAGGTTGACAGCTGTAAAATGTGGACGGTATGTAAATTTGATCCTTGGTAAAAGTGAAGGACAAGTAAGATTGGGTTCATCTGAGTCTTTGAGAGATGTTAGATTAAACTACAATGATTTTACACCTTTCAGCTTCCCCAATGTAGAATTCTTAGTCCTAAGCTGGCAGTGCTTTCAAAGTCCTTCCTGA 2364 0.393 MDDEGLRRGEEIRPALFRAIEQSRIAIVVFSENYASSTYCLEELVMILDCIMKKGRLVWPVFYGVTPSCVRNQQGSYGEALAKLGERFKDDMEKLQKWKVALQEAANLSGSYFKLKHGYEHELIQTIVEEVSKKINRSPLHVANYPVGLESRVQEVNSLLDVGSNQGVSMVGIYGIGGIGKTAIACAVYNAIADQFEGQCFLGDIREKSMKNGLVQLQETILSEMVGEKSIKLGSIYSGMSVLKNKLQRKKVLLILDDVDRLEQLKALAGDHSWFGHGSKIIVTTTNKHLLRVHGVERRYEAKGLDDKEALELFSWHAFKSNEVSPSYMDISKRAVLYSNGHPLALEIIGSNLNGKTMSEWQAALDTIERIPDEDIQEKLKVSYDGLKGNEKEVFLDIACFFRGYDLKDVTSLLLQGRGFSPEYVIRVLIDKSLIKIDQYGFVRMHNLVENMGREIVRQESPSEPGKRSRLWLYEDIVDVLENDKGTDTIEVLMLHLPKNKEVRWNGSELKKMTNLKLLSIENAHFSRGPEHLPNSLRVLKWWGYPSPSLPPEFDPRRLVMLDLSKSCNILGKQLKLMKFESLSEMVLRGCRFIKQAPDMSGAQNLRKLCLDNCKNLVEVHDSIGLLDKLTWFSAIGCTNLRSLPRSFKLTSLEYLSLRKCSSLQCLPNILEEMEHIKNLDLCSTAIKELPFSFRKLTGLKYLVLDKCKMLNQIPISILMLPKLERLTAVKCGRYVNLILGKSEGQVRLGSSESLRDVRLNYNDFTPFSFPNVEFLVLSWQCFQSPS 787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01094 787 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 2 724 IPR044974 GO:0006952
Pumo1g01094 787 Gene3D - 304 388 IPR042197 -
Pumo1g01094 787 ProSiteProfiles TIR domain profile. 1 135 IPR000157 GO:0007165
Pumo1g01094 787 SUPERFAMILY Toll/Interleukin receptor TIR domain 2 110 IPR035897 -
Pumo1g01094 787 Pfam TIR domain 2 138 IPR000157 GO:0007165
Pumo1g01094 787 Gene3D - 133 297 IPR027417 -
Pumo1g01094 787 SMART till_3 1 108 IPR000157 GO:0007165
Pumo1g01094 787 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 135 398 IPR027417 -
Pumo1g01094 787 SUPERFAMILY L domain-like 463 777 - -
Pumo1g01094 787 Gene3D - 1 132 IPR035897 -
Pumo1g01094 787 Pfam NB-ARC domain 150 380 IPR002182 GO:0043531
Pumo1g01094 787 PRINTS Disease resistance protein signature 170 185 - -
Pumo1g01094 787 PRINTS Disease resistance protein signature 339 353 - -
Pumo1g01094 787 PRINTS Disease resistance protein signature 246 260 - -
Pumo1g01094 787 PRINTS Disease resistance protein signature 648 664 - -
Pumo1g01094 787 SUPERFAMILY "Winged helix" DNA-binding domain 375 482 IPR036390 -
Pumo1g01094 787 Gene3D Ribonuclease Inhibitor 494 648 IPR032675 -
Pumo1g01094 787 Gene3D Ribonuclease Inhibitor 649 785 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01094 Pumo-Chr1 17497235 17500143 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01094 19 732 WRKY Transcription Factor Family AT4G12020 34.057 7.28e-94 320
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01094 - - gmx:100810811 1420.99