Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01089 ATGGAAGAAGCAACTGAGTTGCAATCTGAAGAAAATAAATTGTCTATGGAGAAAAATAAGAAAAGAAGGCTCAAAACACCGGCCCAGCTTAAGGCCTTGGAAAATTTTTATAATGATAACAAATATCCCACGGAGGAAATGAAATCAGAACTTGCTGATGAGTTAGAGTTGACAGAAAAGCAAATATCTGGATGGTTTTGCCACAGAAGATTGAAAGATAAAAAAATGTTGAATGATGAAGTATGTGCTAATGGACGACAAGATCGTTCAAGTGGTGTTATCCAGGATCGTGGCAGTGGTCTAGTGCAGGATTCATGTGGAAGCACTAAACATGTTGATTATAGGTATCTGGATCTTAAAGAGGTTGAGAGTCATGGCCTCTATAACCATGAATTTTCAGCTGCAGATATGACCTATGGACACAAGAACCATCATTATACAGAAAATGATAGTGCAACAGATAACACATCATCCGAGAGTAGCTCATCTTTGCAAGACCGATTGCTTCGTCGAGGACAGGATCCGTATGATATGGAGCCTTCTAGTCATCTAACACCTAACAGATCTCTTCCACCCCTCAGTACCAAGGGTGCAAATAACATGGGATATAAACCATCAGGATATTTGAAAGTGAAGGGAGAGATAGAACATGCTGCTATTACTGCTGTTAAAAAGCAATTGGGAAGGCATTATCGGGAAGATGGTCCACTACTTAGTGTTGAATTTGATACAATTCCTCCAGAGGCATTTGAATGTCAAAGTGCAGATCTAGCTAATGAAGCATACTATGCTGCAAATCCTGCTCTTCCAAATTCTCCAGAAGTCTCTGCTGTGAAAAAGCAATCCAGTCTTAGTTCTAGATATGATTCATATTTTACCAAAATCAGTTCCCAAGATTCACATATGGACAGAGGTGACTTTGGCTCCTTGCATGATTCTGATTTCCAGGATAAGAAATCCCGCCAGCATATAAATCAAAGGCCAAATTTTCAGAGTTTTACCAATCCTTTGCCTCACAAGAACTCTTCCCTGGATTTGTATGTAGACTCTACTGGTGAAGCATCTGCTTATAATAACACTAAAAATCGTAGAAGGGGTGCTAAGCATGGTTTTGATGGGATGAGATCAGATTCTGCTTCTAACCCTAGTGATCACTATGAAGAGAATAACCTTGTGGTTAAGCAGACAGATTCTCTGCTACATGGCTATGAAAACAGCAATCTGAAGAATGTACAAAGGAGTGAACATGTGAAATCTAAACCTTCAAATTCAGTACATAAGTCTCAAATTTACTTGGATACTGAAGAAAGAAGAGGGCTTAATAATAGGATGGCAAAGGAAGAGAAGTTTGATGGGGATAGAAAGGTAAAAAAACAATATCGTGATCCAGATGGAGTTAGGGTGCTTACAAATGAAATGATGGTTGCAAAGCGGGCTAAAGTTGATCCACTTGAACAATATGATGTTAAACAAGCACCTGTTGCTGAGGTGGAACCAAGAAAAAGTCAAAGGTGTCCATTTATATCCTTTTTATTTTTCCTTTTTCATGACTACATCCTTCCCCTGGTCCTAAAATTCTGTGTGTATATGTGCATGTCTATGTCAGTATTTCCTGTTTATTGTAGTACCAATTTGGCTGATAATTTTATAAGTAGATTATTTAGTAGCATTTATATTCACAATTTAAATTTTAGTGTTTTTTTATGA 1707 0.3784 MEEATELQSEENKLSMEKNKKRRLKTPAQLKALENFYNDNKYPTEEMKSELADELELTEKQISGWFCHRRLKDKKMLNDEVCANGRQDRSSGVIQDRGSGLVQDSCGSTKHVDYRYLDLKEVESHGLYNHEFSAADMTYGHKNHHYTENDSATDNTSSESSSSLQDRLLRRGQDPYDMEPSSHLTPNRSLPPLSTKGANNMGYKPSGYLKVKGEIEHAAITAVKKQLGRHYREDGPLLSVEFDTIPPEAFECQSADLANEAYYAANPALPNSPEVSAVKKQSSLSSRYDSYFTKISSQDSHMDRGDFGSLHDSDFQDKKSRQHINQRPNFQSFTNPLPHKNSSLDLYVDSTGEASAYNNTKNRRRGAKHGFDGMRSDSASNPSDHYEENNLVVKQTDSLLHGYENSNLKNVQRSEHVKSKPSNSVHKSQIYLDTEERRGLNNRMAKEEKFDGDRKVKKQYRDPDGVRVLTNEMMVAKRAKVDPLEQYDVKQAPVAEVEPRKSQRCPFISFLFFLFHDYILPLVLKFCVYMCMSMSVFPVYCSTNLADNFISRLFSSIYIHNLNFSVFL 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01089 568 CDD homeodomain 20 76 IPR001356 GO:0003677
Pumo1g01089 568 Gene3D - 8 91 - -
Pumo1g01089 568 MobiDBLite consensus disorder prediction 143 202 - -
Pumo1g01089 568 MobiDBLite consensus disorder prediction 355 388 - -
Pumo1g01089 568 SMART HOX_1 18 80 IPR001356 GO:0003677
Pumo1g01089 568 Pfam Homeodomain 20 75 IPR001356 GO:0003677
Pumo1g01089 568 MobiDBLite consensus disorder prediction 302 324 - -
Pumo1g01089 568 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 504 - -
Pumo1g01089 568 MobiDBLite consensus disorder prediction 7 23 - -
Pumo1g01089 568 MobiDBLite consensus disorder prediction 180 201 - -
Pumo1g01089 568 SUPERFAMILY Homeodomain-like 16 79 IPR009057 -
Pumo1g01089 568 MobiDBLite consensus disorder prediction 302 338 - -
Pumo1g01089 568 MobiDBLite consensus disorder prediction 1 25 - -
Pumo1g01089 568 MobiDBLite consensus disorder prediction 150 168 - -
Pumo1g01089 568 ProSiteProfiles 'Homeobox' domain profile. 16 76 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01089 Pumo-Chr1 17421307 17427004 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01089 3 503 Homeobox Transcription Factor Family AT4G03250 38.039 2.59e-70 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Pumo1g01089 Homeodomain 3.7e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01089 - - gmx:100812697 927.546