Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01085 ATGTCACGCACTGATACGATGACGACGACTTCGGATCTTAATAGAACTGGTCCCGTGGAAAGAGACATTGAGCAGGCTATTACTGCTTTAAAAAAAGGGGCTTACTTGCTCAAGTATGGAAGAAGAGGGAAGCCCAAGTTTTGTCCCTTTCGGCTTTCAAATGATGAATCTGTTTTGATATGGTTCTCAGGGAAAGAAGAGAAGCGCCTTAAGCTAACTAATGTTTCTAGGATTATATCTGGACAACGCACGCCAATCTTTCAAAGATATCCGCGGCCTGAGAAGGAATACCAGTCGTTTTCTCTCATCTACAATGATAGATCATTAGACTTGATTTGTAAGGATAAAGATGAAGCTGAGGTTTGGTTCAGTGGATTGAAAGCATTAATTTCGCGCAGCAATCACCGGAAGTGGAGACCAGAGTCTAGAAGTGATGGTATTCCATCTGAAGCTAATAGTCCTCGAACATACACTAGAAGAAGTTCTCCCTTGAATTCTCCATTTGGTAGTAATGAAAGCTTGCAAAAGGATAGTGGGGATCATCTTCGCCTTCATAGCCCATATGAAAGCCCCCCTAAGAATGGTTTGGATAAAGCATTTTCTGATGTGATTTATTATCCTATTCCTCCAATGGGTTTCTTCCCTCCAGATTCTGCCAGTGGTTCGCTCCACTCTGTGTCATCTGGAGGATCAGATAGCATGCATGGTCAAATGAAGACAATGCCTATGGATGCTTTTAGAGTTAGTCTATCAAGTGCTGTTAGCTCATCTAGTCAAGGTTCTGGTCATGATGACGGTGATGGTGTACTGGGTGGTGGGGCTCACCAAGTTGGGAGTAATTTTGGTGTCAAAATGGATTCTTTGTTGCCCAAAGCCTTGGAATCAGCAGTAGTTCTTGATGTACAGAATATTGCTTGTGGTGGGAAACATGCTGCCTTGGTGACCAAACAAGGTGAAGTTTTTTCCTGGGGGGAAGAATCGGGAGGAAGGCTTGGGCATGGAGTTGATTCTGATGTTTCCCATCCAAAGCTTATTGAATCTCTAAGTAATACAAATATTGAACTTGTAGCTTGTGGGGAGTATCATACATGTGCTGTGACACTTTCTGGTGATCTTTATACATGGGGTGATGGCACTTACAATTATGGTCTTCTGGGGCATGGAAATCAGGTGAGCCACTGGGTCCCAAAAAGAGTTAATGGCCCTTTGGAGGGCATACATGTTTCATCTATTTCTTGTGGTCCATGGCACACTGCTGTTGTTACCTCTTCGGGGCAATTATTTACTTTTGGTGATGGTACATTTGGTGTTCTGGGTCATGGAGACCGAAAAAGTGTTTCCTTGCCTAGGGAAATAGAGTCCCTGAAGGGTCTTCGTACTGTGCAGGCTGCTTGTGGTGTTTGGCATACTGCTGCTGTTGTGGAGGTCATGGTTGGAAATTCAAGTTCCAGCAACTGCTCTTCAGGGAAGCTGTTTACATGGGGTGATGGAGACAAAGGTCGACTTGGGCATGGTGACAAGGAATCAAAACTTGTTCCAGCCTGTGTTGTGACTCTTGTTGAACCTAATTTTTGTCAAGTTGCTTGTGGTCATAGTATGACTGTAGCACTTTCTAGATCAGGTCATGTCTATACAATGGGCAGTTGTGTCTATGGCCAGTTAGGAAATACTCAAGCTGATGGGAAGCTACCAACCCGTCTCGAAGGAAAGCTTTCAAAGAGTTTTGTGGAGGAGATAGCTTGTGGTGCATATCATGTTGCAGTTTTAACTTCAAGGACTGAAGTTTTCACGTGGGGGAAGGGTGCAAATGGTCGTTTAGGCCATGGGGATACTAATGATAGAAACACCCCAACATTAGTAGAAGCTTTGAAAGACAAACAAGTAAAAAGTATTGCTTGTGGTACAAATTTCACTGCAGCCATATGCCTGCATAAGTGGGTATCTGGTGTTGACCAGTCCATGTGTTCTGGCTGTCGTGTGCCATTCAATTTCAAAAGGAAACGCCACAATTGTTATAACTGTGGACTGGTTTTTTGTCATTCATGCAGTAGTAAGAAATCTGTTAAGGCTTCAATGGCACCAAACCCCAACAAACCTTATCGTGTCTGTGATAATTGTTTTAATAAAATAAGGAAAACTACAGAAACCGATTCTTCATCTCAGGCTTCTATGAGCAGAAGAGGAAGTGTTAATCAGGGGTCACTTGAGTTTATTGGTAAGGATGATAAATTGGATTCCAGATCTCATAATCAACTTGCCAGGTTTGCTTCAATGGAATCCTTGAAACAAGTGGACAGCAGATCTTCAAAGAAAAACAAAAAAATGGAATTCAACAGTAGCCGCGTCTCACCTGCTCCAAATGGTGGTTCACAGTGGGGAGCAATGAATATTTCTAAATCTTTTAATCCTGTTTTTGGATCATCAAAGAAGTTTTTTTCAGCTTCTGTTCCTGGATCTAGAATTGTTTCCCGGGCAACGTCCCCAATATCTAGACGACCTAGTCCACCTCGTTCAACTACTCCAACCCCAACACTGGGGGGACTTTCATCCCCAAAGATTGTTGTTGATGATGCTAAGAGAACCAATGATAACCTCAGTCAGGAGGTTATTGAATTAAGATCGCAGGTGGAAAACCTGACTCGGAAAGCCCAGCTTCAAGAAGTTGAGTTGGAAAGAACAACTAAACAGTTAAAAGAAGCAATAGCAATTGCAAGCGAAGAAACTGCTAAATGCAAAGCAGCAAAGGAAGTGATCAAGTCACTTACTGCCCAGTTGAAGGACATGGCTGAGAGGCTACCTGTAGGAGCATCTAGAAATGTCAGATCACCGCCCTCTCTTGCTTCCTTTGGCTCAAATCCTGCTTCCAATGACCTTACCAATGCTTCCTTCGATCGATTGAATATTCAAGCAACAAGTCCAGAATCAGTCTCAACTGGATCCACTAACCAGTTACTTTCAAATGGATCAAGCACCATCACCAACCGGAGTGCAGGTCACATTAAACACGGTCAATCAGATGCAACTAGCAGAAATGGGAGCAAAACAAAGGATAATGAGACTGAATGGGTTGAGCAAGATGAGCCTGGTGTATATATTACTCTCACCTCCCTACCAGGAGGTGTAGATCTTAAAAGAGTTCGCTTCAGTCGAAAGCGGTTTAGTGAGAAACAAGCAGAACAATGGTGGGCTGAGAATCGAGCAAGAGTATATGAACAATACAACGTGCGCATGATTGACAAGTCAACAATTGGTGTTGGGAGTGAGGACCTGGCTCATTGA 3279 0.4318 MSRTDTMTTTSDLNRTGPVERDIEQAITALKKGAYLLKYGRRGKPKFCPFRLSNDESVLIWFSGKEEKRLKLTNVSRIISGQRTPIFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAEVWFSGLKALISRSNHRKWRPESRSDGIPSEANSPRTYTRRSSPLNSPFGSNESLQKDSGDHLRLHSPYESPPKNGLDKAFSDVIYYPIPPMGFFPPDSASGSLHSVSSGGSDSMHGQMKTMPMDAFRVSLSSAVSSSSQGSGHDDGDGVLGGGAHQVGSNFGVKMDSLLPKALESAVVLDVQNIACGGKHAALVTKQGEVFSWGEESGGRLGHGVDSDVSHPKLIESLSNTNIELVACGEYHTCAVTLSGDLYTWGDGTYNYGLLGHGNQVSHWVPKRVNGPLEGIHVSSISCGPWHTAVVTSSGQLFTFGDGTFGVLGHGDRKSVSLPREIESLKGLRTVQAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKESKLVPACVVTLVEPNFCQVACGHSMTVALSRSGHVYTMGSCVYGQLGNTQADGKLPTRLEGKLSKSFVEEIACGAYHVAVLTSRTEVFTWGKGANGRLGHGDTNDRNTPTLVEALKDKQVKSIACGTNFTAAICLHKWVSGVDQSMCSGCRVPFNFKRKRHNCYNCGLVFCHSCSSKKSVKASMAPNPNKPYRVCDNCFNKIRKTTETDSSSQASMSRRGSVNQGSLEFIGKDDKLDSRSHNQLARFASMESLKQVDSRSSKKNKKMEFNSSRVSPAPNGGSQWGAMNISKSFNPVFGSSKKFFSASVPGSRIVSRATSPISRRPSPPRSTTPTPTLGGLSSPKIVVDDAKRTNDNLSQEVIELRSQVENLTRKAQLQEVELERTTKQLKEAIAIASEETAKCKAAKEVIKSLTAQLKDMAERLPVGASRNVRSPPSLASFGSNPASNDLTNASFDRLNIQATSPESVSTGSTNQLLSNGSSTITNRSAGHIKHGQSDATSRNGSKTKDNETEWVEQDEPGVYITLTSLPGGVDLKRVRFSRKRFSEKQAEQWWAENRARVYEQYNVRMIDKSTIGVGSEDLAH 1092
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01085 1092 Pfam Transcription factor regulating root and shoot growth via Pin3 1019 1073 IPR013591 -
Pumo1g01085 1092 MobiDBLite consensus disorder prediction 935 955 - -
Pumo1g01085 1092 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 425 476 IPR000408 -
Pumo1g01085 1092 MobiDBLite consensus disorder prediction 941 955 - -
Pumo1g01085 1092 Gene3D - 486 656 IPR009091 -
Pumo1g01085 1092 SMART fyve_4 643 712 IPR000306 GO:0046872
Pumo1g01085 1092 MobiDBLite consensus disorder prediction 252 273 - -
Pumo1g01085 1092 MobiDBLite consensus disorder prediction 971 1021 - -
Pumo1g01085 1092 MobiDBLite consensus disorder prediction 971 1011 - -
Pumo1g01085 1092 MobiDBLite consensus disorder prediction 135 195 - -
Pumo1g01085 1092 SUPERFAMILY RCC1/BLIP-II 286 646 IPR009091 -
Pumo1g01085 1092 FunFam PH, RCC1 and FYVE domains-containing protein 1 241 478 - -
Pumo1g01085 1092 Pfam Regulator of chromosome condensation (RCC1) repeat 488 537 IPR000408 -
Pumo1g01085 1092 Pfam Regulator of chromosome condensation (RCC1) repeat 540 589 IPR000408 -
Pumo1g01085 1092 Pfam Regulator of chromosome condensation (RCC1) repeat 594 641 IPR000408 -
Pumo1g01085 1092 Pfam Regulator of chromosome condensation (RCC1) repeat 369 421 IPR000408 -
Pumo1g01085 1092 Pfam Regulator of chromosome condensation (RCC1) repeat 424 473 IPR000408 -
Pumo1g01085 1092 Pfam Regulator of chromosome condensation (RCC1) repeat 318 366 IPR000408 -
Pumo1g01085 1092 MobiDBLite consensus disorder prediction 714 791 - -
Pumo1g01085 1092 FunFam Putative E3 ubiquitin-protein ligase HERC1 651 719 - -
Pumo1g01085 1092 FunFam PH, RCC1 and FYVE domains-containing protein 1 479 650 - -
Pumo1g01085 1092 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 318 369 IPR000408 -
Pumo1g01085 1092 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 649 711 IPR017455 -
Pumo1g01085 1092 CDD FYVE_like_SF 654 707 - -
Pumo1g01085 1092 MobiDBLite consensus disorder prediction 714 732 - -
Pumo1g01085 1092 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 489 540 IPR000408 -
Pumo1g01085 1092 Pfam FYVE zinc finger 645 711 IPR000306 GO:0046872
Pumo1g01085 1092 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 304 314 IPR000408 -
Pumo1g01085 1092 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 657 718 IPR013083 -
Pumo1g01085 1092 Pfam Pleckstrin homology domain 24 130 IPR001849 -
Pumo1g01085 1092 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 541 592 IPR000408 -
Pumo1g01085 1092 SUPERFAMILY PH domain-like 22 130 - -
Pumo1g01085 1092 Pfam Unstructured region between BRX_N and BRX domain 948 1017 - -
Pumo1g01085 1092 SUPERFAMILY FYVE/PHD zinc finger 645 715 IPR011011 -
Pumo1g01085 1092 Gene3D - 254 485 IPR009091 -
Pumo1g01085 1092 Coils Coil 855 931 - -
Pumo1g01085 1092 ProSiteProfiles BRX domain profile. 1020 1074 IPR013591 -
Pumo1g01085 1092 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 66 930 - -
Pumo1g01085 1092 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 411 421 IPR000408 -
Pumo1g01085 1092 MobiDBLite consensus disorder prediction 146 175 - -
Pumo1g01085 1092 MobiDBLite consensus disorder prediction 823 854 - -
Pumo1g01085 1092 CDD PH_PLC_plant-like 21 131 - -
Pumo1g01085 1092 Pfam Transcription factor BRX N-terminal domain 906 938 IPR027988 -
Pumo1g01085 1092 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 370 424 IPR000408 -
Pumo1g01085 1092 Gene3D - 22 138 IPR011993 -
Pumo1g01085 1092 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 463 473 IPR000408 -
Pumo1g01085 1092 PRINTS Chromosome condensation regulator RCC1 signature 427 441 IPR000408 -
Pumo1g01085 1092 PRINTS Chromosome condensation regulator RCC1 signature 320 336 IPR000408 -
Pumo1g01085 1092 PRINTS Chromosome condensation regulator RCC1 signature 588 609 IPR000408 -
Pumo1g01085 1092 PRINTS Chromosome condensation regulator RCC1 signature 301 314 IPR000408 -
Pumo1g01085 1092 PRINTS Chromosome condensation regulator RCC1 signature 370 386 IPR000408 -
Pumo1g01085 1092 PRINTS Chromosome condensation regulator RCC1 signature 411 427 IPR000408 -
Pumo1g01085 1092 PRINTS Chromosome condensation regulator RCC1 signature 530 548 IPR000408 -
Pumo1g01085 1092 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 593 644 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01085 Pumo-Chr1 17358699 17367766 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01085 915 1083 Major Intrinsic Protein MIP AT1G31880 33.333 3.92e-17 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01085 - - gmx:100791947 2006.11