Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01072 ATGGCTTTCTTTAAGCACTTTTCACATGATGCAGTTTCACATAGTGTTGTGGAAGATAAGGGCCAAGGACAGAATGCTGATAGATCTCGTAGGTTGGTAGATAATGGATGTGCTTATGCAACTTCTAGTGAAAAAGAATTTGATATGAACATGGAGGTACAGTATGAGAGTGACAGTGAACCAGATGGTAGCAGGCTGCAAAAGGAGGCAACCGCTGATGATCTAGTTGGTACAAGAGAATCAAACATAGAAAATATGGGCAGCAAAACAGCTACTGTTGGAAGGTGGGGTACTACATTTTGGAAGGACTGCCAACCTATGTGCCCTCAGAATGGTTCTGAATCGGTGCATGAATCAAAAAGTGGATCAGACAATAGAAATGCAGATGATAATTCATCAGAAGGCAGAGGGGAAAGTTTAGACTCAGAAGATGATGATGGACTAAAGTACTCAAGAAAAGGTCCAATTGGCCATTCTGATATTCCCACTGAAGAGATGTTGTCTGATGAATATTATGAGCGGGATGGGGAAGAGCAAAGTGACTCCTTGCATTACAGGGGCTTTCGTCAACCCACTGGATCAAATTCACGGCCTCAAAAGATGTCTTCTATTGTCAAAAGGCGTATGCATAAGTTTAGGATTTCAGATGATGCTGAAGATAATGATGGTGATGCTGATTATGAAGTAGAGAATGAAGCAGATGAAGATGATCCTGGTGATGCAGACTTTGAGCCCTCAACAAGCGGCCGTGCTGCAAATAAGGATAAAGATTGGAAAGGTGAAGACTCAGATGAAGCTGATGATAGTGATGAGGAAATAGATGTCTCAGATAATGATGATTCAGACTTTGATAAGAAGGCAAAGGGAAGGCAGCGAGGTAAAATTGGACGAAGTATAAGATCTTCCAGAGATCGCAAATATACCGCGTCTAGTCGACAAAGAAGAGTTAAACCATCTTTTGGTGATGAAGATGATGAGTCTACAGCAGATGATTCTGACAGTGAGAGTGACGGTGATTTTAAAAGCATAAAAAAGCGAGGTGTGCATGTACGCAAGAATAATAGTCATTCAGCTGCACCCACTAGTTTTTCTATGCGCAACAGTGAAATTCGCACTTCTAGTAGGACAGTTAGGAAAGTATCATATGTTGAAAGTGAAGAAAGTGAAGAAGCTGATGAAGGAAAGAAGAAATCCCTAAAGGAAGAAATTGAAGAGGATGATGGGGACTCCATTGAAAAGGTGCTCTGGCATCAGCCGAAGGGCCTGGCTGCAGAGGCTCAGAGGAATAATAGTTCTACAGAACCTGTTTTAATGAGTCACTTGTTTGATTCTGAACCTAATTGGAATGATATGGAGTTCTTGATAAAATGGAAAGGCCACTCACATTTGCATTGCCAGTGGAAATCTTTTGTTGAGTTGAAAAATCTCAGTGGTTTTAAGAAAGTTTTGAATTATACAAAGAAAGTGACAGAGGACATCAGGTACAGGATGACAATCTCAAGAGAGGAGATTGAGGTCAATGATGTGAGTAAGGAGATGGATTTAGATATTATCAAGCAGAACAGTCAGGCAGAAAGAATAATTGCAGATAGGATTAGCAAAGATAACTCCGGCAATGTTATTCCAGAATACTTGGTCAAGTGGCGAGGACTATCTTATGCTGAAGTGACTTGGGAGAAGGACATTGATATTGCTTTTGCTCAACATGCTATAGATGAGTATAAGGCTCGTGAGGCTGCAATGTCAGTTCAAGGAAAGATGGTAGATCTTCAGCGTAAAAAGAGCAAAGCAAGTTTGCGGAAACTTGATGAACAACCTGAATGGTTGAAGGGTGGAAAGCTCCGTGATTATCAACTTGAGGGTCTGAATTTTCTTGTTAACAGTTGGAGAAATGATACAAATGTCATTTTAGCTGATGAAATGGGTCTTGGTAAAACTATTCAGTCAGTATCCATGCTCGGTTTTTTACAGAATGCCCAACAAATCCATGGTCCTTTTCTTGTAGTTGTCCCATTGTCTACCTTATCAAACTGGGCTAAAGAATTCAGGAAGTGGCTTCCTGATATGAATATTATAATCTATGTTGGTTCTCGCGCAAGTAGAGAGGTTTGCCAACAATATGAATTTTATAATGATAAAAGGGCTGGCAGGCCTATAAAATTCAATGCACTTTTGACTACGTATGAAGTAGTTCTGAAGGATAAGGCTGTTCTCTCCAAGATCAAATGGAACTATCTAATGGTAGATGAGGCTCATAGACTAAAAAATAGTGAGGCACAATTGTACACAACACTTTCAGAATTTAGCACCAAGAACAAGTTGCTTGTCACTGGTACTCCACTACAAAATAATGTTGAAGAGCTATGGGCTTTGCTCCACTTTCTCGATTCTGTTAAGTTTAAGAGCAAGGATGACTTTGTTCAAAACTATAAGAATCTGAGTTCATTCAATGAAAATGAGCTTGCTAATCTTCATATGGAATTGAGGCCACATATGCTTCGAAGAGTAATCAAAGATGTGGAAAAATCATTACCCCCCAAAATTGAGCGTATTCTTAGGGTAGAAATGTCTCCTCTTCAGAAGCGGTATTACAAGTGGATTTTGGAACGCAACTTTCACGATTTGAACAAAGGAGTTCGAGGGAATCAGGTTTCTCTTCTAAATATTGTGGTAGAATTGAAGAAGTGCTGTAACCATCCCTTCCTGTTTGAAAGTGCTGACCATGGTTATGGTGGGGACTCTGTAAGTAGTGACAGCAGTAAATTAGAAAGAATGGTCTTTAGCAGTGGCAAGCTTGTCATACTTGATAAGCTGCTTGTCAGATTGCATGAAACAAAGCATCGTGTCCTGATTTTCTCTCAGATGGTTAGGATGTTAGATATACTGGCAGGGTACATGTCACTTAGAGGATTTCAATTTCAGAGGCTTGATGGCAGTACAAAAGCTGAGCTGCGACAGCAGGCAATGGATCATTTCAATGCACCAGGTAGTGATGATTTTTGCTTCCTTCTTTCAACACGAGCAGGAGGTTTGGGTATCAACCTTGCCACAGCAGACACTGTTATAATATTTGATTCAGATTGGAATCCTCAAAATGACCTGCAGGCAATGAGCAGAGCTCATCGAATTGGGCAACAAGAAGTTGTTAACATATATAGATTTGTGACAAGCAAAAGTGTCGAGGAAGATATTTTGGAACGTGCTAAGAAGAAGATGGTTCTCGACCACTTGGTGATTCAAAAACTAAATGCGGAGGGTAAATTGGAGAAGAAAGAAGCCAAAAAGGGGGGAAGCTATTTTGACAAAAATGAGCTGTCAGCAATCTTAAGGTTTGGAGCAGAGGAGCTTTTTAAGGAAGAAAGAAATGATGAAGAAAGCAAGAAACGACTCTTAAGTATGGACATAGATGAGATTCTTGAAAGAGCAGAGAAGGTCGAAGAGAAGGAAAATGAGGGTGAACAAGCACATGAATTATTAGGTGCCTTTAAGGTTGCTAATTTCTGTAATGATGAAGATGATGGAAGTTTCTGGAGTCGTTGGATAAAACCTGATGCTGTCTCTCAGGCAGAGGAAGCTCTTGCTCCACGTGCTGCAAGGAATATTAAAAGTTATGCAGAGGATAATCAATCTGAAAGAAGTAGTAAAAGGAAAAAGAAGGAAAGTGAACTACCTGACCGAGTTCAGAAACGCCGGAAAGCAGAGAATTCAGCTCCTTCAACACCGATGATTGATGGAGCTTCGGCCCAAGTGAGAAGCTGGTCATATGGGAATTTGTCTAAAAGAGATGCACTCCGATTTTCTCGCTCAGTTATGAAATTTGGGAATGGGAGCCAAATCAACTTAATTGCTGCAGAGGTTGGTGGTGCAGTAGGAGGAGCCCCACCTGAAGCACAAACTGAACTTTTCAATGCTCTAATTGATGGCTGTACAGAAGCAGTCGAACTTGGAAGTCTGGATCCCAAGGGGCCTTTGTTGGATTTCTTTGGTGTGCCAGTGAAGGCAAATGATATACTTACCCGTGCTCAAGGACTTCAACTCCTGGCAAAGCGCATTAGTCGGTATGAAGATCCCATTGCACAATTCCGTGTTTTAACATATCTCAAACCTTCAAATTGGTTGAAAGGTTGTGGGTGGAATCAAATTGATGATGCAAGATTGCTTCTTGGAGTATATTATCATGGATTTGGTAATTGGGAAAATATAAGATTAGATGAAAGGCTTGGTCTTACAAAAAAAATTGCACCAGTGGAACTTCAACACCATGAAACTTTCTTGCCACGAGCTCCAAATTTGAGAGACCGTGCTAATGCCCTGTTGGAACAAGAACTTGCTTCTCTTGGTGTGAAAAATACCTATACCAAAGTTGGTAAGAAGCCTTCCAAGAAAGAGAGAGAACATCTTGTGAGCATCTCATTGTCACGTGGGCAGGAGAAAAAGAAACAATTGGGTTCTTCTAAATTTAATGTCCAAATAAGAAAGGATAGACTTCAGAAACCTCTAAAAGTTGAACAAATTGTAAAAGAGGAAGGTGAAATGTCTGATGATGAAGAAGTATATGAGCAGTTCAAGGAGGTAAAATGGATGGAATGGTGTCAAGATGTGATGATTGAAGAAATGAAAACCTTGAAACGTCTTCACAAATTGCAGACAACCAGTGCCAATCTTCCAAAGGAAAAGGTGCTTTCAAAAATCCGCAACTACTTGCAGCTTCTTGGGCGAACAATAGATCAAATTGTCTTAGAACATGAAGAGGAACCCTATAAGCAAGACAGAATGACCACGCGATTGTGGAAGTATGTTTCCACCTTTTCCCATCTTTCAGGAGAGAGGCTTCGTCAAATTTATTCAAAACTTATAGTGGAGCAAAATGTGGCAGGGGTTGGTCCCTCTCATGCCAATGGTTCAGTATCTGGTTCATTTAGCAGGAATGGAAACCCTAACCACTCTTATCCGTTCCCTCGCCATATGGAGAAGCAAAGAGGATACAAAAACATGACTACCTACCAAATGCCAGAACCAATGAATATTACTGACATGTCTGAACCATGGAAACAAAGAAGAGCTGAAAGTAATGGTCATTTCCAGGGTCAATTACCACCTCAAAGAACTATAGGTAATGGAATTCCAATTACGGATCCTAACTCACTGGGTATCCTTGGGGCTGGACCATCTGACCAACGTTTTGTCAGTGAGAAGCCTTTTAAGACGCGACCTGGTGGGTTTCCTTCAAGACAAGGAATCAAGTAG 5247 0.4067 MAFFKHFSHDAVSHSVVEDKGQGQNADRSRRLVDNGCAYATSSEKEFDMNMEVQYESDSEPDGSRLQKEATADDLVGTRESNIENMGSKTATVGRWGTTFWKDCQPMCPQNGSESVHESKSGSDNRNADDNSSEGRGESLDSEDDDGLKYSRKGPIGHSDIPTEEMLSDEYYERDGEEQSDSLHYRGFRQPTGSNSRPQKMSSIVKRRMHKFRISDDAEDNDGDADYEVENEADEDDPGDADFEPSTSGRAANKDKDWKGEDSDEADDSDEEIDVSDNDDSDFDKKAKGRQRGKIGRSIRSSRDRKYTASSRQRRVKPSFGDEDDESTADDSDSESDGDFKSIKKRGVHVRKNNSHSAAPTSFSMRNSEIRTSSRTVRKVSYVESEESEEADEGKKKSLKEEIEEDDGDSIEKVLWHQPKGLAAEAQRNNSSTEPVLMSHLFDSEPNWNDMEFLIKWKGHSHLHCQWKSFVELKNLSGFKKVLNYTKKVTEDIRYRMTISREEIEVNDVSKEMDLDIIKQNSQAERIIADRISKDNSGNVIPEYLVKWRGLSYAEVTWEKDIDIAFAQHAIDEYKAREAAMSVQGKMVDLQRKKSKASLRKLDEQPEWLKGGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTIQSVSMLGFLQNAQQIHGPFLVVVPLSTLSNWAKEFRKWLPDMNIIIYVGSRASREVCQQYEFYNDKRAGRPIKFNALLTTYEVVLKDKAVLSKIKWNYLMVDEAHRLKNSEAQLYTTLSEFSTKNKLLVTGTPLQNNVEELWALLHFLDSVKFKSKDDFVQNYKNLSSFNENELANLHMELRPHMLRRVIKDVEKSLPPKIERILRVEMSPLQKRYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDSVSSDSSKLERMVFSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAGYMSLRGFQFQRLDGSTKAELRQQAMDHFNAPGSDDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEDILERAKKKMVLDHLVIQKLNAEGKLEKKEAKKGGSYFDKNELSAILRFGAEELFKEERNDEESKKRLLSMDIDEILERAEKVEEKENEGEQAHELLGAFKVANFCNDEDDGSFWSRWIKPDAVSQAEEALAPRAARNIKSYAEDNQSERSSKRKKKESELPDRVQKRRKAENSAPSTPMIDGASAQVRSWSYGNLSKRDALRFSRSVMKFGNGSQINLIAAEVGGAVGGAPPEAQTELFNALIDGCTEAVELGSLDPKGPLLDFFGVPVKANDILTRAQGLQLLAKRISRYEDPIAQFRVLTYLKPSNWLKGCGWNQIDDARLLLGVYYHGFGNWENIRLDERLGLTKKIAPVELQHHETFLPRAPNLRDRANALLEQELASLGVKNTYTKVGKKPSKKEREHLVSISLSRGQEKKKQLGSSKFNVQIRKDRLQKPLKVEQIVKEEGEMSDDEEVYEQFKEVKWMEWCQDVMIEEMKTLKRLHKLQTTSANLPKEKVLSKIRNYLQLLGRTIDQIVLEHEEEPYKQDRMTTRLWKYVSTFSHLSGERLRQIYSKLIVEQNVAGVGPSHANGSVSGSFSRNGNPNHSYPFPRHMEKQRGYKNMTTYQMPEPMNITDMSEPWKQRRAESNGHFQGQLPPQRTIGNGIPITDPNSLGILGAGPSDQRFVSEKPFKTRPGGFPSRQGIK 1748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01072 1748 MobiDBLite consensus disorder prediction 52 90 - -
Pumo1g01072 1748 SMART helicmild6 960 1044 IPR001650 -
Pumo1g01072 1748 MobiDBLite consensus disorder prediction 58 75 - -
Pumo1g01072 1748 MobiDBLite consensus disorder prediction 354 379 - -
Pumo1g01072 1748 Pfam Domain of unknown function (DUF4208) 1525 1617 IPR025260 -
Pumo1g01072 1748 MobiDBLite consensus disorder prediction 1201 1245 - -
Pumo1g01072 1748 Pfam Chromo (CHRromatin Organisation MOdifier) domain 524 577 IPR023780 -
Pumo1g01072 1748 Pfam Helicase conserved C-terminal domain 931 1044 IPR001650 -
Pumo1g01072 1748 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 626 798 IPR014001 -
Pumo1g01072 1748 MobiDBLite consensus disorder prediction 219 242 - -
Pumo1g01072 1748 MobiDBLite consensus disorder prediction 185 202 - -
Pumo1g01072 1748 SUPERFAMILY Chromo domain-like 406 489 IPR016197 -
Pumo1g01072 1748 Coils Coil 1128 1155 - -
Pumo1g01072 1748 CDD SF2_C_SNF 921 1055 - -
Pumo1g01072 1748 Gene3D - 524 576 - -
Pumo1g01072 1748 FunFam Photoperiod-independent early flowering 1 584 858 - -
Pumo1g01072 1748 SMART ultradead3 610 809 IPR014001 -
Pumo1g01072 1748 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 838 1119 IPR027417 -
Pumo1g01072 1748 Gene3D - 605 844 IPR038718 -
Pumo1g01072 1748 MobiDBLite consensus disorder prediction 1205 1233 - -
Pumo1g01072 1748 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 934 1085 IPR001650 -
Pumo1g01072 1748 FunFam protein CHROMATIN REMODELING 5 isoform X2 524 576 - -
Pumo1g01072 1748 MobiDBLite consensus disorder prediction 1719 1748 - -
Pumo1g01072 1748 MobiDBLite consensus disorder prediction 262 278 - -
Pumo1g01072 1748 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 601 835 IPR027417 -
Pumo1g01072 1748 Coils Coil 1074 1094 - -
Pumo1g01072 1748 CDD CD2_tandem 520 576 - -
Pumo1g01072 1748 Gene3D - 845 1075 IPR027417 -
Pumo1g01072 1748 MobiDBLite consensus disorder prediction 107 410 - -
Pumo1g01072 1748 Pfam SNF2-related domain 633 902 IPR000330 GO:0005524|GO:0140658
Pumo1g01072 1748 SMART DUF4208_2 1513 1618 IPR025260 -
Pumo1g01072 1748 MobiDBLite consensus disorder prediction 119 153 - -
Pumo1g01072 1748 SUPERFAMILY Chromo domain-like 501 577 IPR016197 -
Pumo1g01072 1748 Gene3D - 1341 1455 - -
Pumo1g01072 1748 ProSiteProfiles Chromo and chromo shadow domain profile. 522 586 IPR000953 -
Pumo1g01072 1748 FunFam Chromodomain-helicase-DNA-binding protein 2 isoform 1 845 1075 - -
Pumo1g01072 1748 ProSiteProfiles Chromo and chromo shadow domain profile. 409 488 IPR000953 -
Pumo1g01072 1748 CDD CD1_tandem 407 487 - -
Pumo1g01072 1748 MobiDBLite consensus disorder prediction 297 323 - -
Pumo1g01072 1748 MobiDBLite consensus disorder prediction 380 410 - -
Pumo1g01072 1748 SMART chromo_7 520 579 IPR000953 -
Pumo1g01072 1748 SMART chromo_7 200 490 IPR000953 -
Pumo1g01072 1748 Gene3D - 397 522 - -
Pumo1g01072 1748 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 137 1639 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01072 Pumo-Chr1 17155162 17179401 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01072 636 1071 RAD5 or RAD16-like Gene Family AT1G02670 25.586 4.33e-35 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pumo1g01072 SNF2_N 3.3e-64 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01072 K11367 - gmx:100792398 2797.69