Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01070 ATGAAGGGCTTAACTTCAGCAGATTTCTCTCACAATAACTTCTCAGGCTCAATACCTGAGGGGGGGCAATTCTCAATCTTTAATTCTACATCCTTTGTTGGTAATCCTCAGCTATGTGGATATGACTCCAAGCCATGCAATTTGTCTTCAACAGCTGTGTTGGAATCTCAACAAAAAGGCAGAGCAAAACCTGGGGTTCCTGGGAAGTTCAAGTTCCTTTTTGCATTGGCATTGTTGGGGTGCTCATTGGTGTTTGCAACATTGGCCATCATCAAGAGTAGAAAGACAAGGAGGCACTCCAATTCTTGGAAGTTAACAGCATTCCAGAAGCTGGAATATGGGAGTGAGGACCTCACAGGGTGCATAAAGGAAAGCAATGTCATAGGAAGAGGTGGATCTGGGGTTGTGTACAGAGGAACCATGCCAAATGGAGAGGAAGTGGCAGTGAAGAAGCTCTTAGGAATCAACAAAGGATCTTCCCATGACAATGGCCTCTCTGCAGAAATAAGGACATTGGGAAGAATCAGACACAGGTACATTGTGAGGTTGCTGGCATTTTGTTCAAACAGAGAGACCAATTTGCTTGTCTATGATTACATGCCAAATGGAAGCTTGGGGGAAGTCTTGCATGGGAAGAGGGGTGAGTTTCTCAAGTGGGACACTAGGCTCAAAATAGCCATAGAAGCTGCAAAAGGACTTTGTTATTTGCACCATGATTGTTCCCCTTTGATCATTCATAGGGATGTCAAGTCAAACAACATATTGCTGAATTCTGATTTTGAGGCTCATGTTGCTGATTTTGGGCTTGCCAAGTTCATGCAAGATAATGGGGCATCAGAATGCATGTCTTCCATTGCTGGTTCTTATGGCTATATTGCTCCAGAATATGCATACACATTGAAAGTGGATGAGAAAAGTGATGTTTATAGCTTTGGAGTGGTGCTGCTAGAACTGATAACCGGGGCGAAGGCCAGTGGGGGATTTTGGGGAAGAAGGATTAGACATTGTTCAATGGACCAAGATGCAAACCAATTGGAACAAAGAGATGGTGATGAAGATCCTTGA 1065 0.4376 MKGLTSADFSHNNFSGSIPEGGQFSIFNSTSFVGNPQLCGYDSKPCNLSSTAVLESQQKGRAKPGVPGKFKFLFALALLGCSLVFATLAIIKSRKTRRHSNSWKLTAFQKLEYGSEDLTGCIKESNVIGRGGSGVVYRGTMPNGEEVAVKKLLGINKGSSHDNGLSAEIRTLGRIRHRYIVRLLAFCSNRETNLLVYDYMPNGSLGEVLHGKRGEFLKWDTRLKIAIEAAKGLCYLHHDCSPLIIHRDVKSNNILLNSDFEAHVADFGLAKFMQDNGASECMSSIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELITGAKASGGFWGRRIRHCSMDQDANQLEQRDGDEDP 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01070 354 PANTHER LEUCINE RICH REPEAT KINASE 2 1 324 - -
Pumo1g01070 354 ProSiteProfiles Protein kinase domain profile. 122 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo1g01070 354 Gene3D Phosphorylase Kinase; domain 1 88 199 - -
Pumo1g01070 354 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 91 199 - -
Pumo1g01070 354 ProSitePatterns Serine/Threonine protein kinases active-site signature. 244 256 IPR008271 GO:0004672|GO:0006468
Pumo1g01070 354 SUPERFAMILY Protein kinase-like (PK-like) 115 328 IPR011009 -
Pumo1g01070 354 FunFam Protein kinase superfamily protein 200 272 - -
Pumo1g01070 354 ProSitePatterns Protein kinases ATP-binding region signature. 128 151 IPR017441 GO:0005524
Pumo1g01070 354 Gene3D Transferase(Phosphotransferase) domain 1 200 349 - -
Pumo1g01070 354 SMART serkin_6 122 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo1g01070 354 Gene3D Ribonuclease Inhibitor 1 53 IPR032675 -
Pumo1g01070 354 Pfam Protein kinase domain 124 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01070 Pumo-Chr1 17145537 17147996 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01070 1 348 Receptor kinase-like Gene Family AT5G65700 62.849 6.55e-152 451
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Pumo1g01070 Pkinase 4.6e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01070 - - gmx:100803075 627.476