Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01067 ATGACGAGTGTGATCCTCAGAAGATCCTCTTCCCTAATCTCGCGCCGCTTCTTCGCCGCTCTCACCTCCGTCGAGCCTCTTCCTCGCCGGCTCGCCGCCGTCCGTCACGGTGTCTCCGGCGACGGAGTCAGATCCTTTCACGCGAACTCCGGACCGCTGAATTTCCGCGCGTCGCCGGTTCCTCGCGCGGCGCAGTTCGCCGTCGAGCGCGATTACTCCAACTACGAGGAAGTTAGCGGCGCGAACAGCGACGAAGGACTCGAGATCGCGAAGCTCGGGATCTCGACGGAGATCGTGGATGCTCTGGCTAAGAAAGGGATCGCGAAGCTCTTCCCCATTCAGAGAGCTGTGCTGGAACCTGCAATGCAAGGACGTGATATGATTGGTCGAGCTAGAACGGGAACTGGGAAAACTCTTGCTTTTGGGATACCCATCTTGGACAGGATTATTCAGTTTAATGCTAAGCATGGGCGAGGAAAGGATCCTTTGGCTTTGGTTTTGGCTCCGACTAGAGAACTTGCACGGCAGGTTGAGAAGGAATTCAATGAGGCTGCGCCTAACTTGGACATGATCTGTCTTTATGGGGGTATGCCCATCCAGCAACAAATGAGGCAGCTTAATTATGGTGTAGATATTGCAGTAGGCACGCCTGGTCGAATTATTGATCTTCTCAACAGGGGGGCACTGAATTTGAAGGATGTCAAGTTTGTTGTTCTTGATGAAGCTGATCAGATGCTTCAAGTAGGATTTCAAGAAGCTGTGGAGAAGATCTTGGAGGGATTGTCTCCAAATCGTCAGACTCTTATGTTCTCAGCAACAATGCCATCTTGGATAAGGAATATTACTCGCAATTACCTGAACAACCCCCTAACCATTGACCTTGTTGGAGATTCTGATCAGAAGTTGGCAGATGGAATTTCGCTGTACTCTATTGCATCTGATGCATACACTAAAGCAGGAATTCTTGCACCTCTGATAACAGAGCATGCAAATGGAGGAAAGTGTATTGTTTTCACTCAAACCAAACGTGATGCTGATCGATTATCAAATATCATGGCAAAAAGCCTTAGATGTGAGGCCTTGCATGGAGATATTTCACAAACTCAGAGGGAAAGAACTCTTGCTGGCTTCAGAAACAACAATTTTAATGTTTTAGTGGCAACTGATGTTGCTTCACGTGGACTTGATGTTCCCAATGTTGATCTTGTGAGTTCTGGTTTGCTACACTTTCTATTTGAAATAGTTTTGTTATCATTGTTCTGTTCATTGTTTCTTAATACTTAA 1284 0.4735 MTSVILRRSSSLISRRFFAALTSVEPLPRRLAAVRHGVSGDGVRSFHANSGPLNFRASPVPRAAQFAVERDYSNYEEVSGANSDEGLEIAKLGISTEIVDALAKKGIAKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDRIIQFNAKHGRGKDPLALVLAPTRELARQVEKEFNEAAPNLDMICLYGGMPIQQQMRQLNYGVDIAVGTPGRIIDLLNRGALNLKDVKFVVLDEADQMLQVGFQEAVEKILEGLSPNRQTLMFSATMPSWIRNITRNYLNNPLTIDLVGDSDQKLADGISLYSIASDAYTKAGILAPLITEHANGGKCIVFTQTKRDADRLSNIMAKSLRCEALHGDISQTQRERTLAGFRNNNFNVLVATDVASRGLDVPNVDLVSSGLLHFLFEIVLLSLFCSLFLNT 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01067 427 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 321 427 IPR001650 -
Pumo1g01067 427 Pfam Helicase conserved C-terminal domain 321 403 IPR001650 -
Pumo1g01067 427 CDD SF2_C_DEAD 318 403 - -
Pumo1g01067 427 SMART ultradead3 106 309 IPR014001 -
Pumo1g01067 427 SMART helicmild6 346 406 IPR001650 -
Pumo1g01067 427 Pfam DEAD/DEAH box helicase 111 278 IPR011545 GO:0003676|GO:0005524
Pumo1g01067 427 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 317 403 IPR027417 -
Pumo1g01067 427 Gene3D - 311 410 IPR027417 -
Pumo1g01067 427 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 118 292 IPR014001 -
Pumo1g01067 427 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 87 292 IPR027417 -
Pumo1g01067 427 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 80 404 - -
Pumo1g01067 427 Gene3D - 88 296 IPR027417 -
Pumo1g01067 427 FunFam ATP-dependent RNA helicase RhlE 79 295 - -
Pumo1g01067 427 CDD DEADc 98 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01067 Pumo-Chr1 17126991 17131800 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01067 92 403 Eukaryotic Initiation Factors Gene Family AT3G19760 31.329 1.02e-48 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01067 - - gmx:100802553 733.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo1g01067 1 17126991 17131800 Pumo1g01067 1 17126991 17131800 ECH