Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01060 ATGAACAACAGTGTTCCTGATTGGAATTTTGGGAGTGATTCCTGTGTCACCACCACCAATCAAAAGAAGCCCATGATGGGGGTGGACCAAGAGTTTGTAGAGCTTCTGTGGCAAAATGGCCAGGTAGTGTTGCACAGCCAAACACATAGAAAACCGGTTGTGAATTCAATCCTGCCGAGACCGCTTCAGAGAAATTTTCAATCAACATTAAGGACTAGTGAGCCATTTGGGAACTCAAGTAACTTGATTCAAGATGATGATACAGTCTCATGGATCCAATACCCTCTTGAGGATCCATTGGAACAAGAGTTCTGTTCAAACCTTTTATCTGAACTAGCACCTTGTGAAGTTGAGTCCTATAAGCAAATCAAGCCATTTGAAGAGGCAAAGTTTACCAAATTGGATGCTTCTAGTGCCCCCCATGTGACTGTAAGTTCACAATCACCTACTATGAAATCCTCCTCTTTTCAGGAATTCTCAGGAATTCCTATACCTGCTCCAAGATTCCATGTTGCTGATTCACCCCAGAAAAACAATAATGACTTGGGTGGATCATGTAAGGTCCAAAACTTCTCTCACTTTTCAGCACCCCTTAATGTTTCTTCAGCATCTGCTAACGCGCATTTTAGAGACAAAATTACTGGTAACATGTCAAAAAATGAGATTAGAGAGTGCTCATTGATGACAGTTGGATCAAGTTACTGTGGTAGCAATCACATCCCCCAAGATCCAGATGCAAGCAGGGCATCAAGCAACGGTATCTGGACTACTACTTTATCGGCCGAGCCTGAAGCTGTTAGAGATGATGTGCCGAGAACAATTCCTCAGAATGAGAAAGGGAAATCAGAGATGCTTGAACCGACTGCAACTTCATCTTCTGGTGGCTCAGGTAGTAGTCTTGGAAAAACTTGTTCATTATCTACCAGAAACCAGGGCCAAAAAAGAAAAGGAATAGATATGGAAGAATATGAGGAGCAAAGTGAGGACACAGAACTTAAATCAGCACTTGGAAACAAGTCATCTCAACGCTCAGGGTCGGCTCGAAGGAACCGTGCTGCTGAAGTGCATAATCAATCGGAAAGGAGAAGGAGAGACAGGATCAATGAGAAAATGAAGGCATTGCAACAACTCATACCTCACAGTAGCAAGACAGACAAAGCATCAATGTTGGAAGAGGCAATCGAATACTTGAAATCACTTCAGTTACAACTTCAGCTAATGTGGATGGGATCTGGCATGGCACCAATGATGTTTCCAGGAATTCAGCACTATATGTCACAAATGGGTATGGGAATGGCTACACCGCCTTTCCCTCCTCCTATTCACAATCCAATGCAATTACCGAGAGTGCCACTTGATCAGTCTGTATCTGCATCTCAGACTCCAAACCAGACATTAATGTGCCAAAATCCTATTTTCGGTGCCTTTAATTACCAAAATCAGATGCAAAATCCAGCTCTTTCAGAGCAATATGCGCGTTACATGGGCTATCATCTTATGCAAAATGCCTCTCAGCCAATGAATGTATTCAGATATGGTCCCCAGGCAGTACAACATAGTCAAACAATGATTACACCCAACAACAGCAGTGGAAACATGAGTGGAGCAGCAAATATTGATGAGGCTGTGAGTGGCAAAATGGGTAAGCCACTTACATTCTTCTCCTTGCTTTGGCTAACAACAAAATGA 1689 0.4281 MNNSVPDWNFGSDSCVTTTNQKKPMMGVDQEFVELLWQNGQVVLHSQTHRKPVVNSILPRPLQRNFQSTLRTSEPFGNSSNLIQDDDTVSWIQYPLEDPLEQEFCSNLLSELAPCEVESYKQIKPFEEAKFTKLDASSAPHVTVSSQSPTMKSSSFQEFSGIPIPAPRFHVADSPQKNNNDLGGSCKVQNFSHFSAPLNVSSASANAHFRDKITGNMSKNEIRECSLMTVGSSYCGSNHIPQDPDASRASSNGIWTTTLSAEPEAVRDDVPRTIPQNEKGKSEMLEPTATSSSGGSGSSLGKTCSLSTRNQGQKRKGIDMEEYEEQSEDTELKSALGNKSSQRSGSARRNRAAEVHNQSERRRRDRINEKMKALQQLIPHSSKTDKASMLEEAIEYLKSLQLQLQLMWMGSGMAPMMFPGIQHYMSQMGMGMATPPFPPPIHNPMQLPRVPLDQSVSASQTPNQTLMCQNPIFGAFNYQNQMQNPALSEQYARYMGYHLMQNASQPMNVFRYGPQAVQHSQTMITPNNSSGNMSGAANIDEAVSGKMGKPLTFFSLLWLTTK 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01060 562 Pfam Helix-loop-helix DNA-binding domain 355 401 IPR011598 GO:0046983
Pumo1g01060 562 MobiDBLite consensus disorder prediction 333 348 - -
Pumo1g01060 562 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 351 400 IPR011598 GO:0046983
Pumo1g01060 562 Gene3D - 346 407 IPR036638 GO:0046983
Pumo1g01060 562 MobiDBLite consensus disorder prediction 283 313 - -
Pumo1g01060 562 PANTHER TRANSCRIPTION FACTOR PIF3 19 510 IPR044273 GO:0003700|GO:0006355
Pumo1g01060 562 SMART finulus 357 406 IPR011598 GO:0046983
Pumo1g01060 562 Coils Coil 357 377 - -
Pumo1g01060 562 MobiDBLite consensus disorder prediction 349 365 - -
Pumo1g01060 562 FunFam Basic helix-loop-helix transcription factor 346 409 - -
Pumo1g01060 562 CDD bHLH_AtPIF_like 351 414 IPR047265 -
Pumo1g01060 562 MobiDBLite consensus disorder prediction 258 365 - -
Pumo1g01060 562 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 349 415 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01060 Pumo-Chr1 16849946 16855651 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01060 226 548 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G59060 41.092 1.19e-47 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo1g01060 HLH 1.6e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01060 K16189 - gmx:100784531 1013.06