Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01049 ATGAAGAATTCTGAGAAAACAGGTGTACGGAAGTACCACAAATCGGAAAATCCACGCTTGCGGTGGACACCGGAACTCCATGAATACTTTGTTGAAGTTGTGGAAGGTTTAGGAGGAAGAAACAAGGCAACCCCAAAGAGCATTCTGCAGATGATGCATGTGAAAGGACTGAGGATCTCTCACATTAAAAGCCATCTTCAGATGTACAGGGGCATGAAGGGACATACGATTCTCGCATCAATGCATCAGGAGATGGATGGAAATGAGGATGTTAACGATCATGATCACCCAATCTGCTCCAACTGTTCATCCCAGAGATCACAAGGAACTAAATTACAGGCATCAAAATATGATACGGGGATTGTCAATCAAGAAATTCATCCGTTAGAAAATAAAGGACTTTCACAGACCAGTGAAACTGATTACGATCTAAATCAGGAACCTGAGTCAAGTGCATTACTTAGTGATACGTCAAATGAAGAAAATAGTAGGACAATGAAATTTCTTGATCTCTCCTTCTCTTTCAGCTCTCCACTAATTCCAACGATGCACGGTGGTGATCAAGAGAGAATGCGTTTTTCTTCACCAAATACAGCAGATAATCATGTCATCGATTCTCATTCTATAAAATCTCATGGGAGCAATTATATAAATTTAGACCTAACAATATGA 672 0.4003 MKNSEKTGVRKYHKSENPRLRWTPELHEYFVEVVEGLGGRNKATPKSILQMMHVKGLRISHIKSHLQMYRGMKGHTILASMHQEMDGNEDVNDHDHPICSNCSSQRSQGTKLQASKYDTGIVNQEIHPLENKGLSQTSETDYDLNQEPESSALLSDTSNEENSRTMKFLDLSFSFSSPLIPTMHGGDQERMRFSSPNTADNHVIDSHSIKSHGSNYINLDLTI 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01049 223 Gene3D - 17 73 - -
Pumo1g01049 223 FunFam Two-component response regulator 13 83 - -
Pumo1g01049 223 Pfam Myb-like DNA-binding domain 20 70 IPR001005 -
Pumo1g01049 223 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 3 129 IPR046955 GO:0003700
Pumo1g01049 223 NCBIfam myb-like DNA-binding domain, SHAQKYF class 17 70 IPR006447 GO:0003677
Pumo1g01049 223 SUPERFAMILY Homeodomain-like 16 70 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01049 Pumo-Chr1 16690301 16694424 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01049 8 73 G2-like Transcription Factor Family AT1G14600 66.667 7.14e-25 96.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Pumo1g01049 Myb_DNA-binding 3e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01049 - - ccaj:109790621 375.555