Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01047 ATGCATAGCTTGCTCAAGCAAAGATCTCTCATTTCAACACTAACCACATATTTTCCATTCATCAACAACACCACCACCACCACCCAAACCCATTTATCTTCTTCACTGCAACAACACAAACCTTCCCTTTTCCTCAACCCCTTTTCTTCCCAATCCCAAACCAAAGACCCCAACTTCACCCTCTCCTACCTCATCAACACCTGCAACCTCTCCCCCGCGTGGGCCCTCAAGCTTTCCAAAAGGGTCCACCTCAAATCCCCCGACCAGCCCAACGCCGTCCTTAACCTCCTCAAAACCTTCGGATTCTCCCAACCCCAGCTCTCCCTCCTCGTCAAACGCTTCCCCATAATCCTCCAGACCAAACCCGAAAAGACCATTCTGCCCAAGCTCCAGTTCTTCCTCTCCATCGGCCTCTCCACCGAAGACCTCCCCAAACTCTTAATCGGAAACTCCGTCCTCTTAGAAGGCAGCCTCAAGAACTGCCTCCTCCCGCGCTACAACATCCTCAGCACTGTCCTCAAAAACAAGGACAAGGTTGTTTCCGCCCTAAAACGCGTTCCCTGGTGCCTCACCGGCCGCGGCGTGGTCGATCACTTGCTCGACAATGTGGAGCACTTGAGAGCCGCCGGGGTGCCGCAGGGCCCCATCTCGCACCTGGTGTGCAACAACCTCGGCGTGGCGTGCGTGGAACACGCGAAATTCGTCGAGGCTGTGGAGAAGGTTGTGGAATTCGGGTTTGATCCTGAGAAGGTCGTGTTTGTGGACGCGGTGAAGGTGATTGTGGGGACTAGCAAAGAAGTGTGGGAGAAGAGGGTGGAGGTTTATGAGAGGTGGGGTTGGTCTAATGAGATGTGTGTTTGTGCTTTCAGGAGGTACCCTCAGTGTATGCTGATGTCGGAGGATAAGGTTATGAGGACAATGAGGTTCTTGGTTAAGGACATGGGGTGGCCTGCAGAGGATGTTTTCCGGACTCCGGGGGTTCTCAGCCCCAACTTGGAGAGGACGATTATGCCGCGGTGTCGCGTTGTTAAGGTGTTGAAGGAGAGGGGGCTGGTGAAGAGTGATTCGCGGCTTAGTACGGTTGTTTTGATCACCGAGAAGTTGTTTTTGGAGAGGTTTGTGAGGCGGTTTCAGGATCGTGTGCCGGGGCTTATGGAGGTGTATAGAGGGCGCATCGATCACCTGGATGTGGCGCTGTAG 1200 0.5383 MHSLLKQRSLISTLTTYFPFINNTTTTTQTHLSSSLQQHKPSLFLNPFSSQSQTKDPNFTLSYLINTCNLSPAWALKLSKRVHLKSPDQPNAVLNLLKTFGFSQPQLSLLVKRFPIILQTKPEKTILPKLQFFLSIGLSTEDLPKLLIGNSVLLEGSLKNCLLPRYNILSTVLKNKDKVVSALKRVPWCLTGRGVVDHLLDNVEHLRAAGVPQGPISHLVCNNLGVACVEHAKFVEAVEKVVEFGFDPEKVVFVDAVKVIVGTSKEVWEKRVEVYERWGWSNEMCVCAFRRYPQCMLMSEDKVMRTMRFLVKDMGWPAEDVFRTPGVLSPNLERTIMPRCRVVKVLKERGLVKSDSRLSTVVLITEKLFLERFVRRFQDRVPGLMEVYRGRIDHLDVAL 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01047 399 SMART mt_12 254 281 IPR003690 GO:0003690|GO:0006355
Pumo1g01047 399 SMART mt_12 286 317 IPR003690 GO:0003690|GO:0006355
Pumo1g01047 399 SMART mt_12 108 139 IPR003690 GO:0003690|GO:0006355
Pumo1g01047 399 SMART mt_12 180 212 IPR003690 GO:0003690|GO:0006355
Pumo1g01047 399 SMART mt_12 318 352 IPR003690 GO:0003690|GO:0006355
Pumo1g01047 399 SMART mt_12 144 176 IPR003690 GO:0003690|GO:0006355
Pumo1g01047 399 FunFam Mitochondrial transcription termination factor-like 158 381 - -
Pumo1g01047 399 Gene3D Transcription termination factor 3, mitochondrial 195 379 IPR038538 -
Pumo1g01047 399 Pfam mTERF 259 369 IPR003690 GO:0003690|GO:0006355
Pumo1g01047 399 Pfam mTERF 94 252 IPR003690 GO:0003690|GO:0006355
Pumo1g01047 399 PANTHER CGI-12 PROTEIN-RELATED 57 376 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01047 Pumo-Chr1 16593250 16596237 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Pumo1g01047 mTERF 7.9e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01047 K15032 - gmx:100778090 640.573