Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01042 ATGACCTTTGGATCCATGGTGGGGTCTCTAAAAAAGGCCTTAGCACAAGCTTTAATATCTTATTATGTATTTGCAGGTGATGTTGTGCCTAACAATATGGGTGAACCTGAAGTGCTTTGTAATAATCGTGGGGTTGATTTTGTTGAAGCTGAGGCAGATGTTGAGCTAAAGTGCCTCAACTTTTACAACCCAGATGACACCATTGAAGGCAAGTTTGTTCCAAAGAAGAAAAATGGTGTGCTTGCTGTCCAGGCAACTTCACTCAAGTGTGGTGGAATAATAGTGGCATGCACATTTGACCATCGCGTAGCAGATGCCTATTCAGCAAACATGTTTCTTGTCTCATGGGCCGAGATGGCCCAGCCCACCAAGCCCAACACCGTCTCCGCCGCCGCAACTGCTTCTCGCCACCCATGTTTCCGCCGTTCCCTCCTCAGCCCTCGCCGTCCAGGTTCCATCCACCCTTCCCTACACGACATGTACACCCCCATCTCCGAGCTCCCTCCTCCTCCGGCCACAGCCGCCACCTCTCTCCTCAGCCGCATCTACTACGTCACGGCGGAGCAGCTCCACCGCATGCAGTCCCTCGCCGCCACGCGCACGAAGCTCGAGTGTTTCTCCGCGTTCTTGTGGAAGATGGTTGCACGTGCAGCTTCAAAAGAGAAAAATGGTAAAAGGGTTGTGGCCAAAATGGGCATTGTGGTTGATGGAAGGAAGAGGCTTGGCAATGGTGACAAAGAGAGTGAGGCAATGATGGAGTGTTACTTTGGGAACGTGCTTTCCATACCCTTTGGCGGGAAACCGGTGGAGGAGTTGGTGGAGGAGCCACTAGGGTTTGTGGCAGAGGCGGTTCACGAGTTTGTGGCAGTGGCAGCCACCGAGGAGCACTTCTTAGGACTAATCGATTGGGTGGAGGCTCACCGGCCGGTCCCTGGAATTGCTAAGATTTATTGTAGCAACGCCAACGAGGGACCGGCCTTTGTGGTGTCCTCCGGGCAGAGGTTCCCGGAGGACAAGGTGGATTTTGGGTGGGGAAAGGTTGTGTTTGCGTCTTACCATTTTCCTTGGGGTGGCGAAGCTGGTTATGTTATGCCAATGCCAAGTCCTTTGGGGAATGGTGATTGGGTTGTGTACATGCACCTTGCGAAGAGGCAATTGGAGATCATAGAGTCTGAGGCTGCTCATGTCTTCAGGCCATTAACTTGGGATTACCTTAACCAGTAA 1224 0.5221 MTFGSMVGSLKKALAQALISYYVFAGDVVPNNMGEPEVLCNNRGVDFVEAEADVELKCLNFYNPDDTIEGKFVPKKKNGVLAVQATSLKCGGIIVACTFDHRVADAYSANMFLVSWAEMAQPTKPNTVSAAATASRHPCFRRSLLSPRRPGSIHPSLHDMYTPISELPPPPATAATSLLSRIYYVTAEQLHRMQSLAATRTKLECFSAFLWKMVARAASKEKNGKRVVAKMGIVVDGRKRLGNGDKESEAMMECYFGNVLSIPFGGKPVEELVEEPLGFVAEAVHEFVAVAATEEHFLGLIDWVEAHRPVPGIAKIYCSNANEGPAFVVSSGQRFPEDKVDFGWGKVVFASYHFPWGGEAGYVMPMPSPLGNGDWVVYMHLAKRQLEIIESEAAHVFRPLTWDYLNQ 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01042 407 Gene3D - 163 392 IPR023213 -
Pumo1g01042 407 Pfam Transferase family 8 395 - -
Pumo1g01042 407 Gene3D - 2 162 IPR023213 -
Pumo1g01042 407 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 6 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01042 Pumo-Chr1 16502350 16507234 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01042 10 390 Monolignol Biosynthesis Gene Families AT5G48930 23.632 1.25e-26 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01042 - - gmx:100785067 740.725