Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01033 ATGAATGCTAAGGTACAAAGCTCTGATGATACCAAGAAGGATGAAGAGGTTGTGCTTCCTGGCTTTAGATTCCACCCCACAGATGAAGAGCTTGTTGGGTTTTATCTGCAGAGAAAGGTGGACAAGAAGCCTCTAAAAATTGAACTCATCAAACAGGTTGATATCTACAAATATGATCCATGGGATCTTCCAAAGGTGAATTCATTTGGGGACAAAGAATGGTATTTTTTCTGCATAAGAGGGAGGAAGTACAGGAACAGCGTGAGGCCAAACAGGGTAACTAGGTCAGGGTTCTGGAAGGCCACAGGGATTGACAAGTCCATATATTGCGTGAAAGAGCCCCATGAATGCATTGGCCTGAAGAAGTCATTGGTCTACTACCGTGGAAGTGCTGGCAAAGGCACCAAAACTGACTGGATGATGCATGAGTTTCGCCTTCCACCCAATGCAAAATCCACCAACAATAATAATCAACTTGCTAATGACGTTCAAGAAGCTGAGGTGTGGACACTCTGCAGGATATTCAAACGCACACCATCTTTCAAAAAGTACACTCCAAATTTGAAAGACTCAACACCAGTCACCAAACCAAACCCTGTGAATTCCAACACAAGCACCTTAGATTCTGACAATTGCAAGCCATATTTGATTTGCAGAGACCCTATGATGATGCAACAAATAGAAAGAAAACCAGTTATTGGACAAGTTGATGAAAAGAAACACATGTTTCTGGGCCAGTTCGGCCCACTACCCCATCTTCAGGCCCCATCAACCCCTTACCCAAATTTTTGGAACCAGAATAATAATGTTGAGGATTATGCATTTGCCAATGAGAATTGGGATGACCTAAGATCTGTGGTTCAGTTTGCAATTGATCCATCCACGGTGTTTGATTGTACAGAAACATATATTCCACCCTACTTTTCTTAG 930 0.4247 MNAKVQSSDDTKKDEEVVLPGFRFHPTDEELVGFYLQRKVDKKPLKIELIKQVDIYKYDPWDLPKVNSFGDKEWYFFCIRGRKYRNSVRPNRVTRSGFWKATGIDKSIYCVKEPHECIGLKKSLVYYRGSAGKGTKTDWMMHEFRLPPNAKSTNNNNQLANDVQEAEVWTLCRIFKRTPSFKKYTPNLKDSTPVTKPNPVNSNTSTLDSDNCKPYLICRDPMMMQQIERKPVIGQVDEKKHMFLGQFGPLPHLQAPSTPYPNFWNQNNNVEDYAFANENWDDLRSVVQFAIDPSTVFDCTETYIPPYFS 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01033 309 Gene3D NAC domain 27 181 IPR036093 GO:0003677|GO:0006355
Pumo1g01033 309 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 15 220 - -
Pumo1g01033 309 Pfam No apical meristem (NAM) protein 20 146 IPR003441 GO:0003677|GO:0006355
Pumo1g01033 309 ProSiteProfiles NAC domain profile. 18 177 IPR003441 GO:0003677|GO:0006355
Pumo1g01033 309 FunFam NAC domain-containing protein 35 27 180 - -
Pumo1g01033 309 SUPERFAMILY NAC domain 15 176 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01033 Pumo-Chr1 16330877 16336668 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01033 6 178 NAC Transcription Factor Family AT5G39820 59.140 3.48e-75 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pumo1g01033 NAM 1.3e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01033 - - gmx:100819795 603.979