Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01022 ATGGTCACCTTCAGGTTTCACCAGTACCAGGTTGTGGGGAGAGCTCTTCCCACTGAAACTGATGTGCATCCTAAGATCTACAGGATGAAGCTGTGGGCCACCAATGAGGTCCGTGCCAAATCTAAGTTCTGGTACTTGAGAAAGCTAAAGAAGGTCAAGAAAAGCAATGGCCAAATGCTAGCCATCAATGAGGTTCCAATTGTGGACATCAAGAGAAAAATCCTACCAAGATCAAGAATGATGGAATTTTGGCTGCGATATCAGAGCCGAACTGGTTATCACAACATGTACAAGGAATACCGAGATACTACTCTAAATGGTGCTGTTGAACAAGTGTACAATGAAATGGCATCTCGTCATAGAGTCAGGTTTCCATGCATCCAGATCATCAAGACTGCCACCATACCAGCTAAACTTTGCAAAAGGGAGAGCACCAAGCAGTTCCACAACTCCAAAATCAAGTTCCCATTGGTGTTCAAGAAGGTTAGGCCCCCAACTAGGAAGCTCAAAACAACATACAAGGCAACCAAGCCAAACTTGTTTATGTAA 549 0.4408 MVTFRFHQYQVVGRALPTETDVHPKIYRMKLWATNEVRAKSKFWYLRKLKKVKKSNGQMLAINEVPIVDIKRKILPRSRMMEFWLRYQSRTGYHNMYKEYRDTTLNGAVEQVYNEMASRHRVRFPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKATKPNLFM 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01022 182 Gene3D - 1 68 - -
Pumo1g01022 182 Hamap 50S ribosomal protein L18Ae [rpl18a]. 6 68 IPR028877 -
Pumo1g01022 182 PANTHER 60S RIBOSOMAL PROTEIN L18A 3 181 IPR028877 -
Pumo1g01022 182 FunFam 60S ribosomal protein L18a 1 68 - -
Pumo1g01022 182 FunFam 60S ribosomal protein L18a 77 151 - -
Pumo1g01022 182 PIRSF Ribosomal_L18a 1 182 IPR021138 GO:0003735|GO:0005840|GO:0006412
Pumo1g01022 182 Pfam Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A 7 132 IPR023573 GO:0003735|GO:0005840|GO:0006412
Pumo1g01022 182 Gene3D - 77 151 - -
Pumo1g01022 182 SUPERFAMILY RplX-like 80 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01022 Pumo-Chr1 16127961 16130283 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01022 1 182 Cytoplasmic Ribosomal Protein Gene Family AT2G34480 84.699 2.14e-109 310
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01022 K02882 K22683 gmx:100306365 320.472