Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01000 ATGAGTCAACAAGGGACACTTACCTGGGAAGCTCGGATGAAAGTTATCACTGGCACAGCCAAAGCGCTAGCTTACTTACATGAAGCAATAGAACCGAAAGTTGTTCACCGGGATATAAAGTCTAGCAACATATTGATTGATACCGAGTTCAATGCAAAGGTTTCTGACTTTGGTTTAGCCAAACTTTTGGATTCAGGAGAAAGTCACATTACTACTAGAGTAATGGGAACATTTGGTTATGTGGCACCAGAATATGCTAATACGGGTTTGTTAAATGAGAGGAGTGACATTTACAGCTTTGGTGTTCTCCTGCTAGAAGCAGTTACTGGGAGGGATCCTGTGGACTACTCACGTCCTGCTAATGAGGTGAATCTTGTTGAATGGCTCAAGATGATGGTGGGGACAAGGAGAGCTGAGGAAGTTGTGGACTCAAGGCTTGAAGTGAAACCATCAATACGTGCTTTAAAGCGTGCTCTTCTAGTTGCTCTTAGATGTGTTGATCCCGAAGCAGAAAAGAGGCCCAAAATGAGTCAGGTTGTGAGGATGCTTGAAGCCGATGAATATCCATTCCGAGAGGATCGAAGAAATAGAAAGAGTCGCACTGTGAGCATGGAAATTGAATCTCTTAAGGATATTTCTGGTCCATCTGATGCTGCTGAAAAGGTGAAGGGTTCTGAAGACCATGCACCAGAAACATCTCAAGGGTAG 708 0.4379 MSQQGTLTWEARMKVITGTAKALAYLHEAIEPKVVHRDIKSSNILIDTEFNAKVSDFGLAKLLDSGESHITTRVMGTFGYVAPEYANTGLLNERSDIYSFGVLLLEAVTGRDPVDYSRPANEVNLVEWLKMMVGTRRAEEVVDSRLEVKPSIRALKRALLVALRCVDPEAEKRPKMSQVVRMLEADEYPFREDRRNRKSRTVSMEIESLKDISGPSDAAEKVKGSEDHAPETSQG 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01000 235 SMART serkin_6 1 183 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo1g01000 235 FunFam Putative receptor-like serine/threonine-protein kinase 1 198 - -
Pumo1g01000 235 ProSiteProfiles Protein kinase domain profile. 1 191 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo1g01000 235 ProSitePatterns Serine/Threonine protein kinases active-site signature. 34 46 IPR008271 GO:0004672|GO:0006468
Pumo1g01000 235 Gene3D Transferase(Phosphotransferase) domain 1 1 202 - -
Pumo1g01000 235 MobiDBLite consensus disorder prediction 190 205 - -
Pumo1g01000 235 MobiDBLite consensus disorder prediction 190 235 - -
Pumo1g01000 235 MobiDBLite consensus disorder prediction 214 228 - -
Pumo1g01000 235 Pfam Protein kinase domain 3 181 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo1g01000 235 PANTHER OS01G0323000 PROTEIN 1 205 - -
Pumo1g01000 235 SUPERFAMILY Protein kinase-like (PK-like) 3 186 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01000 Pumo-Chr1 15764708 15766994 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01000 7 186 Trihelix Transcription Factor Family AT1G70460 52.717 2.12e-60 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Pumo1g01000 Pkinase 5.3e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01000 - - gmx:100813931 436.802