Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00987 ATGGACAAACAATCTGGGAATTCTTCATCAGCACATGCTGCTGCAGGTCCATCTGAGATTTCCCCACTTAATGTTCCAAAAAAGGTGGGAAGCAGTGCATGGGGAATACCACGTGCCAGTGATGTGTTCCATGACCCAAGTGATGTTAGCTTGTTTTCTAGTTCACTGCCTGTTCTTCCACATGAAAAGTTAGATTTGACTGATTCTGAAAATTATGGTCAACCAGGCGATGATAACTTGCTACCATTAGATAAAGTTCACAAAGAGGATGAGGGACATGATCCTTTTGATGACTTTGAAACCAATGCAATTGGAAACATGCTTCCTGATGATGAAGAGGACCTTTTAGCTGGGATTATGGATGATTTTGACCTCAGTAAATTGCCCAGCCAACTGGAGGATTTGGATGAAAATGATCTGTTTGTCAATGGAGGTGGATTTGAGATGGATTTTGAATCCCAAGAGAGCCTCAATATTGGTATGTCCAAGATAAGCATATCAGATGGAGTTGCTTCAAATGGTATTGGTCACTTTGCAATTCCAAATGGTGTGGGAACAGTGGCTGGGGAGCATCCCTATGGAGAGCATCCATCAAGGACATTATTTGTTCGAAACATCAACAGTAATGTTGAGGACTCTGAATTACGAACACTATTTGAGCAATATGGGGATATCAGAACTTTGTACACAGCATGCAAGCATAGGGGCTTTGTGATGATATCTTACTATGACATTCGAGCTGCTCGCACTGCCATGCGTGCTTTACAAAACAAGCCCTTGAGACGTAGAAAACTTGATATTCATTTTTCAATTCCCAAGGATAATCCCTCGGAAAAGGATATTAATCAAGGAACCCTTGTAGTGTTCAATTTAGATCCATCAGTATCAAATGACGACCTTCGTCAAATATTCGGGGCTTATGGTGAGGTCAAGGAGATCAGGGAAACACCACATAAGAGACACCATAAATTCATTGAATTTTATGATGTTAGAGCAGCAGAGGCAGCTCTTAAAGCATTAAATCGAAGTGATATTGCTGGGAAACGCATAAAACTTGAACCCAGTCGTCCTGGTGGAGCTCGTAGAAACTTGATGCAACAACTGAGCCAAGAACTGGAACAAGATGAAGCTCGAACTTTTAGACAACAAGTAGGTTCACCGGTGGCCAATTCTCCTCCCGGTAGCTGGGCACAATTTGGTAGTCCAGTTGAACACAATCCATTAGGTTCTTTTAGCAAGTCCCCTGGTTTGGGTCATGGCAGTCCCATTAATACCAACCATTTGTCTGGATTGGCTGCAATTCTTTCCCCACATGCAACAGCCTCTACCAAGATTGCACCAATTGGCAAGGACCCTGGAAGGGCTGCAAATCAGATGTTTGCAAACTCTGGATCATCACAAGGAGCAGCTTTTCAGCATTCTATATCATTTCCTGAGCAAAATGTAAATGCAAGTCCTAGGCCTATATCTACTTTTGGTGAATCAAGTTCAAGTGCATCAAGTATTGGAACACTGTCCGGTCCTCAATTTCTTTGGGGAAGCCCAACTCCTTACTCCGAGCTTTCAAACACTTCTGCCTGGTCTTCATCTTCTGTGGGGCTTCCATTTACATCTAGTGTCCAAAGGCAGGGTTTCCCATATACTAGTAATCGCAGTCCTTTTCTTGGCTCCCACTCCCATCATCATGTTGGATCTGCTCCATCTGGCCTTCCGCTTGATAGGCATTTTAGCTACTTCCCTGAGTCACCTGAAGCTTCTCTCATGAGCCCAGTTGCATTTGGGAATTTAAATCACGGTGATGGGAATTTTATGATGAACATGGGTGCTCGTGCATCTGTAGGAGCCGGTGTTGGTCTTTCTGGAAATACCACTGAAATTAGCTCACCCAATTTCAGAATGATGTCTCTGCCTAGGCATGGTTCCTTGTTCCATGGAAATAGTTTGTTTTCTGGACCTGGAGCAACTAACATTGAGGGATTAGCTGAACGTGGACGAAGTAGACGACCTGACAATGGTGGGAACCAAATTGATAGTAAGAAGCTGTACCAGCTTGATCTTGACAAAATCGTCAATGGTGAAGATACAAGGACTACTTTAATGATTAAAAACATTCCTAACAAGTATACATCGAAGATGCTGCTTGCTGCGATTGATGAGAATCACCGGGGTACTTATGACTTCCTCTACTTGCCGATTGACTTTAAGAATAAGTGTAATGTGGGTTATGCTTTTATCAATATGGTGTCTCCTTCACACATCATTGCCTTCTACAAGGCCTTTAATGGGAAAAAGTGGGAGAAGTTCAACAGCGAAAAGGTTGCTTCACTGGCATATGCACGGATACAGGGAAAGGCTGCACTTGTGATGCATTTCCAGAATTCAAGCTTAATGAATGAGGACAAACGGTGCCGGCCAATTCTCTTTCATTCAGAGGGCCAAGATACTAGTGACCAGGAACATTTTCTATCCAGCAATTTGAATATATGCATTCGCCAACCGGATGGATCCTATTCAGGTGATATGTTGGAGAGCCCGAAGGGCAATTCGGATCAGAAGCTAGAGAAAGATTAA 2571 0.4306 MDKQSGNSSSAHAAAGPSEISPLNVPKKVGSSAWGIPRASDVFHDPSDVSLFSSSLPVLPHEKLDLTDSENYGQPGDDNLLPLDKVHKEDEGHDPFDDFETNAIGNMLPDDEEDLLAGIMDDFDLSKLPSQLEDLDENDLFVNGGGFEMDFESQESLNIGMSKISISDGVASNGIGHFAIPNGVGTVAGEHPYGEHPSRTLFVRNINSNVEDSELRTLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDINQGTLVVFNLDPSVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKALNRSDIAGKRIKLEPSRPGGARRNLMQQLSQELEQDEARTFRQQVGSPVANSPPGSWAQFGSPVEHNPLGSFSKSPGLGHGSPINTNHLSGLAAILSPHATASTKIAPIGKDPGRAANQMFANSGSSQGAAFQHSISFPEQNVNASPRPISTFGESSSSASSIGTLSGPQFLWGSPTPYSELSNTSAWSSSSVGLPFTSSVQRQGFPYTSNRSPFLGSHSHHHVGSAPSGLPLDRHFSYFPESPEASLMSPVAFGNLNHGDGNFMMNMGARASVGAGVGLSGNTTEISSPNFRMMSLPRHGSLFHGNSLFSGPGATNIEGLAERGRSRRPDNGGNQIDSKKLYQLDLDKIVNGEDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIIAFYKAFNGKKWEKFNSEKVASLAYARIQGKAALVMHFQNSSLMNEDKRCRPILFHSEGQDTSDQEHFLSSNLNICIRQPDGSYSGDMLESPKGNSDQKLEKD 856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00987 856 CDD RRM1_MEI2_like 198 274 IPR034453 -
Pumo1g00987 856 MobiDBLite consensus disorder prediction 1 15 - -
Pumo1g00987 856 Gene3D - 188 282 IPR012677 -
Pumo1g00987 856 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 201 265 IPR000504 GO:0003723
Pumo1g00987 856 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 286 351 IPR000504 GO:0003723
Pumo1g00987 856 PANTHER RNA RECOGNITION MOTIF-CONTAINING 27 827 - -
Pumo1g00987 856 FunFam Protein MEI2-like 1 283 378 - -
Pumo1g00987 856 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 199 272 IPR000504 GO:0003723
Pumo1g00987 856 MobiDBLite consensus disorder prediction 444 465 - -
Pumo1g00987 856 Pfam RNA recognition motif 2 696 792 IPR007201 -
Pumo1g00987 856 SUPERFAMILY RNA-binding domain, RBD 698 783 IPR035979 GO:0003676
Pumo1g00987 856 MobiDBLite consensus disorder prediction 836 856 - -
Pumo1g00987 856 MobiDBLite consensus disorder prediction 1 31 - -
Pumo1g00987 856 MobiDBLite consensus disorder prediction 480 500 - -
Pumo1g00987 856 Gene3D - 283 381 IPR012677 -
Pumo1g00987 856 CDD RRM2_MEI2_like 283 353 - -
Pumo1g00987 856 FunFam MEI2-like protein 5 isoform 2 188 282 - -
Pumo1g00987 856 Gene3D - 690 785 IPR012677 -
Pumo1g00987 856 SUPERFAMILY RNA-binding domain, RBD 196 359 IPR035979 GO:0003676
Pumo1g00987 856 CDD RRM3_MEI2_like 699 784 IPR034454 -
Pumo1g00987 856 SMART rrm1_1 698 774 IPR000504 GO:0003723
Pumo1g00987 856 SMART rrm1_1 200 268 IPR000504 GO:0003723
Pumo1g00987 856 SMART rrm1_1 285 353 IPR000504 GO:0003723
Pumo1g00987 856 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 284 357 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00987 Pumo-Chr1 15666688 15671780 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00987 194 507 Eukaryotic Initiation Factors Gene Family AT3G16380 24.207 2.53e-12 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00987 - - gmx:100812324 1625.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo1g00987 1 15666688 15671780 Pumo1g00987 1 15666688 15671780 ECH