LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo1g00979	ATGGACGTTTCGCAGTCCTATTCTCCGACGAACAACCACCGCAAGCGAACTTCTGCTTCCGATCCCACTTCGTCCTATGACGCGCCGCCACTGGCGGTGCTTCAAAGCATGGAGCTTCCCAATAATCAAGCTGAAGAAGGGTCTTCTCAGAAGAAAATGGGAAGAGGGAAGATCGAAATCAAACGGATCGAGAACACCACCAATAGGCAAGTCACCTTCTGCAAGCGCCGCAACGGTTTGCTGAAGAAAGCTTATGAATTATCAGTTCTGTGTGATGCTGAAGTTGCCCTTGTTGTCTTCTCAAGCCGTGGCCGTTTGTATGAGTATGCCAACAACAGTGTTAGGGCCACAATTGAAAGGTACAAGAAGGCATGTGCTGCTTCCTCAAACGCAGAATCCGTATCTGAAGCTAATACACAGTTTTACCAGCAAGAATCTTCCAAATTGAGAAGACAAATTCGAGATATTCAGAATCTAAACAGGCACATCCTTGGTGAAGCACTTGGTTCTCTGAGTCTCAAGGAACTAAAGAATCTCGAGGGTAGATTGGAGAAAGGATTAAGCAGAGTTAGATCTAGGAAGCATGAAACATTGTTTGCTGATGTCGAGTTCATGCAAAAGCGGGAAATTGAGCTGCAAAACCATAATAATTATCTGCGAGCTAAGATAGCTGAACATGAGAGAGCTCAACAAGAGCAATCAAATATGATGGCAGGAACAGGAACCCTATGCGAGTCCCTTCCTTCACAAGCATATGACAGGAATTTTTTCCCTGTAAATCTCATAGCTGCTTCTGATCAACAATATTCACGTCAAGACCAGACTGCTCTCCAACTTGTGTAA	843	0.4472	MDVSQSYSPTNNHRKRTSASDPTSSYDAPPLAVLQSMELPNNQAEEGSSQKKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYANNSVRATIERYKKACAASSNAESVSEANTQFYQQESSKLRRQIRDIQNLNRHILGEALGSLSLKELKNLEGRLEKGLSRVRSRKHETLFADVEFMQKREIELQNHNNYLRAKIAEHERAQQEQSNMMAGTGTLCESLPSQAYDRNFFPVNLIAASDQQYSRQDQTALQLV	280

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo1g00979	280	ProSiteProfiles	MADS-box domain profile.	53	113	IPR002100	GO:0003677\|GO:0046983
	Pumo1g00979	280	CDD	MADS_MEF2_like	54	130	IPR033896	GO:0000977\|GO:0045944
	Pumo1g00979	280	FunFam	agamous-like MADS-box protein AGL11	65	148	-	-
	Pumo1g00979	280	Pfam	K-box region	137	223	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Pumo1g00979	280	PRINTS	MADS domain signature	90	111	IPR002100	GO:0003677\|GO:0046983
	Pumo1g00979	280	PRINTS	MADS domain signature	55	75	IPR002100	GO:0003677\|GO:0046983
	Pumo1g00979	280	PRINTS	MADS domain signature	75	90	IPR002100	GO:0003677\|GO:0046983
	Pumo1g00979	280	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	62	109	IPR002100	GO:0003677\|GO:0046983
	Pumo1g00979	280	ProSitePatterns	MADS-box domain signature.	55	109	IPR002100	GO:0003677\|GO:0046983
	Pumo1g00979	280	PANTHER	SERUM RESPONSE FACTOR HOMOLOG	53	236	-	-
	Pumo1g00979	280	MobiDBLite	consensus disorder prediction	1	31	-	-
	Pumo1g00979	280	SUPERFAMILY	SRF-like	54	128	IPR036879	GO:0003677\|GO:0046983
	Pumo1g00979	280	SMART	madsneu2	53	112	IPR002100	GO:0003677\|GO:0046983
	Pumo1g00979	280	ProSiteProfiles	K-box domain profile.	139	229	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Pumo1g00979	280	Coils	Coil	212	232	-	-
	Pumo1g00979	280	Gene3D	-	65	135	IPR036879	GO:0003677\|GO:0046983
	Pumo1g00979	280	Coils	Coil	142	162	-	-
	Pumo1g00979	280	MobiDBLite	consensus disorder prediction	1	25	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo1g00979	Pumo-Chr1	15567711	15578373	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo1g00979	31	280	MADS-box Gene Family	AT3G58780	68.482	5.58e-119	339

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-MIKC	Pumo1g00979		K-box	5.6e-25	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo1g00979	K09264		-	gmx:100808734	429.869

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pumo1g00979	1	15567711	15578373	Pumo1g00979	1	15567711	15578373	ECH