Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00947 ATGGAGCTTTTGAAGCCTTTGCACCCTCACCATGCACCCATTTTGCAAATTCCCTTTCACGGGGTTCCTTCTTCTTCTCAATTTCAGTCTCAGGTTCCCCTTCCTATGATTTCTAAGGTTCATGTAGCTGTTGGGAAATCGCTGGACAAAGCTGTTCCCTTGCTTCGATGGACTTTAAACCACTTTCGGAACGCGGAAATCGTCATTGTTCATGCTTATCAACCTTCTCTCACCATCCCCACTCTATTGGGGAAATTGCCTGCATCACAGGCTAGTCCTGCAGTCGTGTCTGCTTTTCGAAAAGTGGAAAGAGAACAGACCATGAAGCTTTTAGACAAGTATTTGAGCATTTGCCACGCAGCTAGGGTTAAGGCCAGTATTATTGTAACTGAAGCTGACCAAGTCCAAAAAGGAATTGTTGATTTGGTTATTAAGCATAATATTCAGAAGCTTGTCATTGGAGCAGTACCAGAAAATTGCATGAAAGTGAAAAGGAATTCCAGCAAAGCAAATTACACTGCCAAAAATGCTCCTCCTTTCTGTGAAGTATGGTTTATCTATAAAGGTAAACACATTTGGACAAGAGAGGCTTCTGAAACACCATGTTCTTCATCCTCATGTACTCAACCTGAGATTGCCACCGCAGAAAGCTTGAGATGTAGATCTCTTCAATATGGTAAGAATGAATTATTTGACACAGAATATCTTCAACCAAATTCAGCAAGAACTACTACTGGTTCTGGAATTAGAAGTTGGGTTCAGGGGGAAATCATTGAAACCGAAGCCACTTTTTCATCCAAAGCATCCAGTTGCAGCAGTCATTGTTCCCCCCAAAATTCTTCTCGGGCTTATTTAGATACATATTTAGAGGCCATGGAAGAAAGAATTAACAAACAACTTATTGAAACCAAGAGAGAAGCAGAGGCAGTAACAGACGAAGCCTTCGCAGAGCTATTAAAGTGTGAGAGGTTAGAAGTTGAAGCCATGGAGGCCATAAGGAAGGTCAATTTGTTTGAATCTGCCCATGTGCGTGAAGTAAAGCTCAGAAAAGAGGCTGAGGATGCACTGAGAGCTACAGTACAAGAACAACAAAAGCTCTTGAATGAGAGTGAAGAAATTGCTGGCGAGCTACAAATGACCATGAGAAATATTGCCCTGCTAGATAGTCGTGCTCAGGAAGCAAACCGTAGGCGCGATGAAGCTGCAGATGAACTATCACTAATTCAAGAATCCATCTCAACCCTGTGGCAAGAAAGGCAGCAGATCAGGAGACAGAAAATGGAAGCCCTACGTTGGCTTGAGCGGTGGAGAAGTCGTGGACAAGTTGGAGCAGCTCATTGCAATGGGGTGATTGGGTTTGCTGAAGAGTTACCTGAGTTAGCAGAATTTTCATTATCAGATCTTCAAAATGCCACATGTAATTTTTCCAATAGCTTTAAAATTGAGCAAGGTGGATACGGTTGTATATACAAGGGGGAAATGTTGGGTAGGACTGTTGCTATAAAAAAGTTCCATCAACATAACGTGCAAGGACCATTGGAGTTTCGTCAAGAGGTTCAAGTTCTTGGTAGTCTCCAGCACCCTCATTTAATCACTTTACTTGGTGTTTGCCCTGAAGCCTGGTCAATTGTATATGAGTACCTCCCCAATGGAACTCTTCAAGACTACCTATTCCGAAAAAGCAACAATTCCCCTTTGACATGGAATACCCGAGCACAAATGATTGCTGAAATCGCTAGTGCACTCTGCTTCCTACATTCTTTTAAACCTGAAACTATTATCCATGGTGATCTGAAGCCAGAAACTGTACTACTTGATTCTTCACTTGGTTGCAAGATGTGTGGATTTGGGTTCAGCAGGCTGGTGAGTGAGGAGTCTCTCCTCCGTCCTAATTTCCGCTTGAGCACCGAACCAAAGGGTTGCTTTCACATATACGGATCCAGAGTTTCAGAGAACTGGAATACTAACAACCAAGTCTGA 1980 0.4278 MELLKPLHPHHAPILQIPFHGVPSSSQFQSQVPLPMISKVHVAVGKSLDKAVPLLRWTLNHFRNAEIVIVHAYQPSLTIPTLLGKLPASQASPAVVSAFRKVEREQTMKLLDKYLSICHAARVKASIIVTEADQVQKGIVDLVIKHNIQKLVIGAVPENCMKVKRNSSKANYTAKNAPPFCEVWFIYKGKHIWTREASETPCSSSSCTQPEIATAESLRCRSLQYGKNELFDTEYLQPNSARTTTGSGIRSWVQGEIIETEATFSSKASSCSSHCSPQNSSRAYLDTYLEAMEERINKQLIETKREAEAVTDEAFAELLKCERLEVEAMEAIRKVNLFESAHVREVKLRKEAEDALRATVQEQQKLLNESEEIAGELQMTMRNIALLDSRAQEANRRRDEAADELSLIQESISTLWQERQQIRRQKMEALRWLERWRSRGQVGAAHCNGVIGFAEELPELAEFSLSDLQNATCNFSNSFKIEQGGYGCIYKGEMLGRTVAIKKFHQHNVQGPLEFRQEVQVLGSLQHPHLITLLGVCPEAWSIVYEYLPNGTLQDYLFRKSNNSPLTWNTRAQMIAEIASALCFLHSFKPETIIHGDLKPETVLLDSSLGCKMCGFGFSRLVSEESLLRPNFRLSTEPKGCFHIYGSRVSENWNTNNQV 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00947 659 Gene3D Transferase(Phosphotransferase) domain 1 548 643 - -
Pumo1g00947 659 Coils Coil 349 369 - -
Pumo1g00947 659 SUPERFAMILY Protein kinase-like (PK-like) 459 627 IPR011009 -
Pumo1g00947 659 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 36 177 - -
Pumo1g00947 659 Coils Coil 293 313 - -
Pumo1g00947 659 PANTHER OS02G0152300 PROTEIN 40 628 - -
Pumo1g00947 659 Gene3D HUPs 26 187 IPR014729 -
Pumo1g00947 659 CDD STK_N 39 189 - -
Pumo1g00947 659 Coils Coil 377 411 - -
Pumo1g00947 659 ProSiteProfiles Protein kinase domain profile. 475 659 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo1g00947 659 Gene3D Phosphorylase Kinase; domain 1 452 547 - -
Pumo1g00947 659 Pfam Protein tyrosine and serine/threonine kinase 480 626 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00947 Pumo-Chr1 14616140 14620646 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00947 39 631 U-box Gene Family AT2G45910 33.609 2.77e-102 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Pumo1g00947 PK_Tyr_Ser-Thr 2.4e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00947 - - gmx:100788846 1197.19