Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00941 ATGTCGCCGAGCTTCGTCTTCGACCCTCCCAGCGACGAAGAAATCGAACACTCCGAACACGAAGAAGAAGAAGAATCAGAAGAAGCTGAGTCAGGATCAGAATCAGAATCAGACTCAGAAGGTGAAGAAGAAGAAGAAGAAGGGCACAAAGAAGCGCGGGTTCCGAAGAAGAAAACACAGTCTCCATGGGACTTCGCTAAGTACACGGAATCAGTGGCCGAGGAACACGCTCGCAGGAGCACAACCTCGGTCGACGAGAAAATCTCCAAAGCACTCAAACAACGTTCCACGCCGCTCGTTGCTGAGATCGACCACAGCTCCGAGTCCGAACCTGATGAACAAGAAGATTATAGACCGGAGGAAGAAGATGAAGAAGAGGGTAATGGTGGTGATAGCAAGTCCTTTTTTGCTCCTTCTGATGGAGCCTCTTTCCATGCTGATTCCTTCTTGCAGCTCAATTTGTCTCGCCCTTTGCTCCGGGCTTGTGAGGCCTTGGGGTATTCTAAACCAACGCCAATTCAGGCAGCATGTATTCCATTGGCGTTGACTGGTCGTGATATATGTGGAAGTGCCATTACCGGGTCAGGGAAGACAGCTGCATTTGCACTACCTACTTTAGAGAGGTTGTTGTTCCGTCCAAAGCGCATGCGTGCAATAAGGGTCCTCATTCTTACTCCAACCAGAGAGTTGGCAGTCCAAGTACACAGTATGACAGAGAAGCTTGCTCAGTTTACTGATATAAGCTGTTGCCTGGTTGTTGGGGGTCTGTCAACGAAGGTGCAAGAGGCTGCTTTGAGAACAATGCCAGACATTGTTGTGGCTACTCCAGGACGCATGATAGACCATTTACGCAATGCTATGTCCGTGGATTTGGATGATCTTGCTGTTCTAATCCTTGATGAGGCAGATCGTCTTTTGGAGCTTGGATTTAGTGCTGAAATTCAAGAACTTGTTCGCTTGTGTCCCAAAAAAAGGCAGACTATGCTGTTTTCTGCAACAATGACTGAGGAGGTGGATGAACTTATTAAACTTTCCCTGTCAAAGCCCTTGCGTCTTTCTGCTGACCCATCTACAAAACGGCCAGCAACCTTGACTGAGGAGGTTGTTAGAATACGAAGAATGCGTGAAGTAAATCAGGAATCAGTTCTTCTCGCAATGTGCACCAAAACTTTTACTTCCAAAGTCATCATCTTCAGTGGAACAAAGCAAGCTGCACATAGGTTGAAGATTATATTTGGATTAGCTGGCTTAAAAGCTGCTGAGCTTCATGGAAATCTTACTCAAGCCCAGCGCCTTGAAGCTTTGGAACAGTTTAGGAAGCAGCAAGTTGATTTTTTGGTTGCAACAGATGTGGCTGCCCGTGGCCTTGATATTATTGGTGTTCAAACAGTTATCAACTTTGCATGTCCACGTGATCTTACTAGCTATGTTCATCGAGTGGGTCGTACTGCAAGAGCTGGAAGAGAAGGATATGCTGTCACTTTCGTGACTGACAATGACCGATCACTTTTAAAAGCCATTGCCAAGAGGGCTGGTTCAAAACTAAGAAGCCGCATTGTTGCCGAGCAATCTATACTTAAGTGGTCTCATATAATTGAGCAAATGGAGGATCAAATTGCTGAAGTACTTCAAGAAGAGAGAGAAGAAAGAGTCCTAAGGAAAGCTGAAATGGAGGCCACAAAGGCTGAAAACATGATTGCACATAAGGAGGAGATCTTTTCCCGTCCCAAAAGAACCTGGTTTGTCACAGAGAAGGAGAAAAAGCTTGCTGCAAAAGCATCAAAGGCATCTGTGGATAAGAACAAGAGTTCTGGGAAAGAGGTAATTAGTGCTGAACAAGCTGAAGACCTCAGAATGAAGGAAAAGAGGAAGCGAGAGCGAGAGAAACATTTGCCTAGAAAGAAGCGTAGAAAATTGGAAGCGGCTAGAGAGATGTTGGAGGACGAGGAGGAGGATGGCAAACAAGTAGAGGCTAAGGGGGGAAATAAAAAAGAAAAGGGTGGAATGTCACTTGTTGATCTTGCTTATCGACGGGCAAAAGCAGTGAAGGCTGTCAATAAGGCCTTAGATTCTGGCAAGATTGTGAAGAAATATAAAAAGAAATCTAATGATACTTCCCGAAAAACTCCTTCAAGGACAGAAGAGATGCGAGAGCTATTCCAGACTGACATGAAGGATAAAAAGCCAAAAAGAAGAGGCGTTGGAGGTGGAAAGAAAAAGAGTTCATTCAAAAGCAAGTCAAGGTACAAGCGCAAGTAG 2259 0.4529 MSPSFVFDPPSDEEIEHSEHEEEEESEEAESGSESESDSEGEEEEEEGHKEARVPKKKTQSPWDFAKYTESVAEEHARRSTTSVDEKISKALKQRSTPLVAEIDHSSESEPDEQEDYRPEEEDEEEGNGGDSKSFFAPSDGASFHADSFLQLNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLFRPKRMRAIRVLILTPTRELAVQVHSMTEKLAQFTDISCCLVVGGLSTKVQEAALRTMPDIVVATPGRMIDHLRNAMSVDLDDLAVLILDEADRLLELGFSAEIQELVRLCPKKRQTMLFSATMTEEVDELIKLSLSKPLRLSADPSTKRPATLTEEVVRIRRMREVNQESVLLAMCTKTFTSKVIIFSGTKQAAHRLKIIFGLAGLKAAELHGNLTQAQRLEALEQFRKQQVDFLVATDVAARGLDIIGVQTVINFACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLRSRIVAEQSILKWSHIIEQMEDQIAEVLQEEREERVLRKAEMEATKAENMIAHKEEIFSRPKRTWFVTEKEKKLAAKASKASVDKNKSSGKEVISAEQAEDLRMKEKRKREREKHLPRKKRRKLEAAREMLEDEEEDGKQVEAKGGNKKEKGGMSLVDLAYRRAKAVKAVNKALDSGKIVKKYKKKSNDTSRKTPSRTEEMRELFQTDMKDKKPKRRGVGGGKKKSSFKSKSRYKRK 752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00941 752 Coils Coil 532 572 - -
Pumo1g00941 752 CDD SF2_C_DEAD 364 496 - -
Pumo1g00941 752 MobiDBLite consensus disorder prediction 593 669 - -
Pumo1g00941 752 Gene3D - 107 353 IPR027417 -
Pumo1g00941 752 MobiDBLite consensus disorder prediction 1 137 - -
Pumo1g00941 752 MobiDBLite consensus disorder prediction 46 60 - -
Pumo1g00941 752 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 298 306 IPR000629 -
Pumo1g00941 752 MobiDBLite consensus disorder prediction 638 666 - -
Pumo1g00941 752 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 219 507 IPR027417 -
Pumo1g00941 752 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 363 526 IPR001650 -
Pumo1g00941 752 SMART ultradead3 166 367 IPR014001 -
Pumo1g00941 752 MobiDBLite consensus disorder prediction 731 752 - -
Pumo1g00941 752 SMART helicmild6 402 487 IPR001650 -
Pumo1g00941 752 MobiDBLite consensus disorder prediction 690 752 - -
Pumo1g00941 752 Coils Coil 636 659 - -
Pumo1g00941 752 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 66 708 - -
Pumo1g00941 752 Pfam Helicase conserved C-terminal domain 384 487 IPR001650 -
Pumo1g00941 752 Gene3D - 354 522 IPR027417 -
Pumo1g00941 752 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 147 175 IPR014014 GO:0003724
Pumo1g00941 752 MobiDBLite consensus disorder prediction 15 45 - -
Pumo1g00941 752 Pfam DEAD/DEAH box helicase 171 341 IPR011545 GO:0003676|GO:0005524
Pumo1g00941 752 MobiDBLite consensus disorder prediction 69 92 - -
Pumo1g00941 752 MobiDBLite consensus disorder prediction 108 128 - -
Pumo1g00941 752 MobiDBLite consensus disorder prediction 593 623 - -
Pumo1g00941 752 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 178 352 IPR014001 -
Pumo1g00941 752 MobiDBLite consensus disorder prediction 690 730 - -
Pumo1g00941 752 CDD DEADc_DDX27 158 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00941 Pumo-Chr1 14526791 14535423 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00941 135 504 Eukaryotic Initiation Factors Gene Family AT3G13920 33.512 3.48e-50 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00941 K13181 - gmx:100776684 1117.06