Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00916 ATGCTCCTCTCTACCTCTGGCCGCCTCTGCACTGTAATCGAAATCTCCTCTGCAAAATGGCAGCTCATGGTGTCATCTCTTCCCAAAGGCTTCTACAAGATAGGCGTCTATGCAGTGGATGTCGTTTTGCTTATTACTCTCATCATTTGCTACAACAACCAAAACAACAACCAAGGGAAAGGAAGATCAATTGGCACATTGTTTCAAAACATGAAAGTGGCAGCAGTTGCGCGTCAACTGAGCAACCTTATTTCCAACAAAAGCATTTTGGAGGATCTCAAGAATAACCTCAAGAATCTGCAAGACCAAAGACAAAAGGTGCAAGAAAATCTTACTTGGGACTCTGAAGAATTCCAGACTCAGAATAGCTGGCTAAAAAATGTTGATGAGATTGATGCACAAGTGAGTGCATTCTTGAACTACTATGAAGGCAAAAGTACTTGCACAAATTTCTTGCGGCAGTACAAGCTTGGTAAACAATCAAGAAAGATGCTACTAGATATTTCAAAATTACTTGAAGAAGGAATATCTCATCTAGTTGTGAAACCAGCAAAAGATTACAAGGTCCCAAAATCAAGAAGTGATACTATCAATGACATTATGGATGCCCTAAAGGACCCTCTTATCCGAGCAGTTGGAGTATGGGGGTTGGGTGGTGTAGGCACAACCTCATTAGCCAAACATATTGGAGGGCAGGCAAAAGAACAAGACTTGTTCAATGCAGTGATTGTCATAACTGTAACTGAGAAGCCAAATGTGGAACAAGTTCAAGGAGTTATTGCAGCTGAATTGGGTGTGCAGTTCAATGAGGAAACACTTGTGAAAAGAAGAAACAAATTGCGTCAGAGAATAAAGAATGAGAAAAGTACTCTTGTCATAGTTGATGATACGTGGGGGGAATTGAACCCACAAGAATTTGACTTGGAGGAAGTTGGAGTTCCTTTGGGTGAGGAACATACAGGGTGCAAATTATTGTTGACATCAGGAAACTTGAATTTCATACAAAATTTGAAGGGTGCCCCTAAGCCTAAGGTGTTTCAATTAGAACAATTACAAGAAGAAGAGGCTCAGAGCTTGTTTGAGAAGATGGTTGAAGAAGGTGCTGCTCAAGATCCCGAGGCAAGTGACATTGTAAGAGAAATATTGAAAATTTGTGAAGGTTCAGCCTCTTCATTTTTTGCCATAGCAAAGGCATTAAGAAATAAGGGCCTTGATGCTTGGCAGGATGCCTTGGTGAAGTTGAAGGAAAATGAATCACCAATAAAACTATTGTCCAATAGTTTAGAAGATGAGGAACTCAAGTCATTGTTCTTGCTTCTTACTGTTAGGGGAAGAAGGGCTATTAACAAGTATAGCATATATATAGACATGTGGACAGGTTTATTCAAAAATCTTGAAACAGCGGATGCTGCGAGAAACAAGCGTGATTCATTGATTAGTGATCTGAAGTCCTATGGTCTTCTGGTTGAAGATGAAAAGCAAAATGTTAAAATAAATGACTTCATATGGCACACTGCTTACTCAATAGCTCAAAATGATCTAAAAGCTTCAATGATTTACAGAGAATGGCCACCTGAAGATTGGCTAGAAGGTTTATGCTTCTGCAACATCAATACAGTGAGTGGTTTGCAGGTTCCTGAAAGATTGCAATGTCCAAACTTGCAACAACTTGTGATAAGTACAGACAATCCCTCAATGCAGGTTCCAGATTCCTTTTTTGAGGAGACTAAACTTCTGAAAGTCCTAAATTTTGTTGGCTTTGAATGTCCAAAGCTTCCAGTTAGTTTTGTTGTGTTAAAGAACCTTGAAGCATTATCCATGTCTAATTGCAAATTGGGAGATATTACTAAAATTGGTGAGCTCACAAACTTGCGAGTTCTTGGCCTCCTTGGAAGTAGTATCCAACAATTGCCTGCACAAATTGGTCAGCTTCAGAAGTTGCTATTCTTGGATTTAAGAGATACACATCTCCAAGTGATTCCACCCAATGTTCTGTCCAACTTGACAAGCTTAGAAGAATTATATTTGAGAAACTCCTTTTGTAATTGGGAGATTGAAATATCTACCAATGAAAAAAAGAATGCAAGCTTGAAAGAGCTTACAAAGTTGGATCACTTGGTATATGTAGAAGACTTGTATGTTCCTGATCCTCAGGCATGGCCGGTGGACTTATTCTTTGGAAAGCTAAAATCATACACAATTTTTATTGGGGATAAGTGGGACCGAGCACATGGTGGTGGTCATGGATTAAAGACATTGAAACTGAAGCTTAACAGAAGGTTTCAGTCAGAGGATGGAATAAAAAAGATGCTGAAAAGTGTTGATGTTTTGTACCTGGATGAACTGAATGGTGTCCAGAATGTTCTTAGTGATTTGGATTGTGAGGTGTTTCCCCATCTGCAGTCTCTCTTTATACAAAACAATGCTGAAATCAAGTGCATAGCCACAGGGTCAAGTCATGATCCTCTTGATGCTTTCCCCAACTTGGAGTCTCTTTCTCTCAACAATCTAAGCAATTTGCAGCACATATGCCATGGTGGTCCTTTGGCTGAAAAGTCTTTCTTCAAACTAAGAGTCATCAAAGTAAAGAACTGCAATGCAATGGGATGTCTCTTCTCAAAATCAATGATCAAGGGCCTTCCTCATCTTGCTAATATCGAAGTTTCAGAGTGCAAATCCATAAAGGCAATTGTGCTTATGGATGGTGAAGAGAATCCTCCCATAGAATTTCCTGACTTATGCTCTCTAACCTTACGAGGACTCCCAGCATTAATTTGTTTCTGCTTAAGTGAAGGATCAGCTTCTTCCACTGATACACCTACACTTTTTCATGACAAGGTTTTTTGTCCTAATTTGGAGAATCTGCAGATTTCTCAGGTTAGTGAATTGACAACAATATGGAATGAGGGGTATGATGTTGAAAATTCATTTTGGAAACTGAAAAACGTAAACATCACAGATTGTGAGAAATTGAGGACTGTTTTTCCTGTTAATCTTTCCAAAAATCTTCATAATTTGAAGATATTAGAGGTTAAGAATTGCAGTTCAATGACAAGCATTTTTACTGTGATGAGGCAAGATAACAAACGACCAGGACTTCAATTGAGCTTTGCAATGATTTATATAAATTTAATTCGCCTGCCAAAATTGGAGTATGTATGTGTTACTACCGGATTTGAATCCCTGAAGAAAAAATTTGAGGAAGAATGGCAGGCTGGCATTTCCACTTTACCAGCTAACACTCGTGCTGAAAATGAAAGAAAGATGAAAAAGTATTTGGAAGAGTATTTAAATATGTAG 3300 0.3876 MLLSTSGRLCTVIEISSAKWQLMVSSLPKGFYKIGVYAVDVVLLITLIICYNNQNNNQGKGRSIGTLFQNMKVAAVARQLSNLISNKSILEDLKNNLKNLQDQRQKVQENLTWDSEEFQTQNSWLKNVDEIDAQVSAFLNYYEGKSTCTNFLRQYKLGKQSRKMLLDISKLLEEGISHLVVKPAKDYKVPKSRSDTINDIMDALKDPLIRAVGVWGLGGVGTTSLAKHIGGQAKEQDLFNAVIVITVTEKPNVEQVQGVIAAELGVQFNEETLVKRRNKLRQRIKNEKSTLVIVDDTWGELNPQEFDLEEVGVPLGEEHTGCKLLLTSGNLNFIQNLKGAPKPKVFQLEQLQEEEAQSLFEKMVEEGAAQDPEASDIVREILKICEGSASSFFAIAKALRNKGLDAWQDALVKLKENESPIKLLSNSLEDEELKSLFLLLTVRGRRAINKYSIYIDMWTGLFKNLETADAARNKRDSLISDLKSYGLLVEDEKQNVKINDFIWHTAYSIAQNDLKASMIYREWPPEDWLEGLCFCNINTVSGLQVPERLQCPNLQQLVISTDNPSMQVPDSFFEETKLLKVLNFVGFECPKLPVSFVVLKNLEALSMSNCKLGDITKIGELTNLRVLGLLGSSIQQLPAQIGQLQKLLFLDLRDTHLQVIPPNVLSNLTSLEELYLRNSFCNWEIEISTNEKKNASLKELTKLDHLVYVEDLYVPDPQAWPVDLFFGKLKSYTIFIGDKWDRAHGGGHGLKTLKLKLNRRFQSEDGIKKMLKSVDVLYLDELNGVQNVLSDLDCEVFPHLQSLFIQNNAEIKCIATGSSHDPLDAFPNLESLSLNNLSNLQHICHGGPLAEKSFFKLRVIKVKNCNAMGCLFSKSMIKGLPHLANIEVSECKSIKAIVLMDGEENPPIEFPDLCSLTLRGLPALICFCLSEGSASSTDTPTLFHDKVFCPNLENLQISQVSELTTIWNEGYDVENSFWKLKNVNITDCEKLRTVFPVNLSKNLHNLKILEVKNCSSMTSIFTVMRQDNKRPGLQLSFAMIYINLIRLPKLEYVCVTTGFESLKKKFEEEWQAGISTLPANTRAENERKMKKYLEEYLNM 1099
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00916 1099 Pfam NB-ARC domain 195 426 IPR002182 GO:0043531
Pumo1g00916 1099 Gene3D Ribonuclease Inhibitor 904 1030 IPR032675 -
Pumo1g00916 1099 Gene3D Ribonuclease Inhibitor 736 902 IPR032675 -
Pumo1g00916 1099 Coils Coil 1082 1099 - -
Pumo1g00916 1099 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 186 439 IPR027417 -
Pumo1g00916 1099 SUPERFAMILY L domain-like 533 918 - -
Pumo1g00916 1099 Gene3D - 350 429 IPR042197 -
Pumo1g00916 1099 Coils Coil 80 117 - -
Pumo1g00916 1099 Gene3D Ribonuclease Inhibitor 526 709 IPR032675 -
Pumo1g00916 1099 PRINTS Disease resistance protein signature 211 226 - -
Pumo1g00916 1099 PRINTS Disease resistance protein signature 284 298 - -
Pumo1g00916 1099 PRINTS Disease resistance protein signature 1001 1017 - -
Pumo1g00916 1099 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 949 1064 - -
Pumo1g00916 1099 Gene3D - 183 342 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00916 Pumo-Chr1 13874929 13881080 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00916 205 664 WRKY Transcription Factor Family AT5G45050 23.954 8.01e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00916 - - vun:114188479 1234.17