Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00895 ATGGCCAAGTGGTTTTCTGGGATAATGGGAGCACCAACAAGGTGTAAGGAAGCTTTTTCTATGTGGGTTTTGGCTGGCAGTGGCGGCTATGCAATTGATCTTTTCATAAAAGTTGTTTTTGCTGAATTTACTTGCATTCTGGCACTAGGAGGGTCCATAATGGGGATAATTGCAGGAGCTATCAAAGGCCATACCAGAGGAGCTGGTTTTCTTGATGGAGCTTGCAAAGGAGCTGTCACAGGGGCCATTGCAGCACTAGAATTGCTAAATATTGCTGCTTATGATGAGCCACTGTCTAAGGTTGCCCTGCTGAGGAGTTTATTAAATGGAAAGCTATTTATGGAATGGATATGTCCAGCTGTTGCACAAGCATATCAATGTCATATCAGTGCACATGCAACAACTTACACAGAAGAATCAGATATTTACAATGACATTGTCAAGGGAATCACGGTCAAAGGGATGGCTTGGAATGTCATTCAAAAGCTTCCTGTTCAACAATTCAATTCCAGTAAAATGTTCAAATTATACAATGACTCATGCTGCTCAATTTGCTTCCAGGATTTTGAGAATGAAGAATTTGTGAGGACACTTCCAAAATGTGGCCACTTTTTTCACTTAGTTTGCATAGACAAATGGCTAGTCCAACAAGGATCATGCCCCGTGTGTAGAATTTGTGTTCCAGATTTATGA 693 0.4113 MAKWFSGIMGAPTRCKEAFSMWVLAGSGGYAIDLFIKVVFAEFTCILALGGSIMGIIAGAIKGHTRGAGFLDGACKGAVTGAIAALELLNIAAYDEPLSKVALLRSLLNGKLFMEWICPAVAQAYQCHISAHATTYTEESDIYNDIVKGITVKGMAWNVIQKLPVQQFNSSKMFKLYNDSCCSICFQDFENEEFVRTLPKCGHFFHLVCIDKWLVQQGSCPVCRICVPDL 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00895 230 ProSiteProfiles Zinc finger RING-type profile. 182 224 IPR001841 -
Pumo1g00895 230 SUPERFAMILY RING/U-box 174 228 - -
Pumo1g00895 230 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 30 225 IPR044523 -
Pumo1g00895 230 CDD RING-H2_EL5-like 181 224 - -
Pumo1g00895 230 Pfam Ring finger domain 182 224 IPR001841 -
Pumo1g00895 230 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 145 229 IPR013083 -
Pumo1g00895 230 SMART ring_2 182 223 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00895 Pumo-Chr1 13534036 13536072 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00895 14 224 C3H Transcription Factor Family AT5G66070 34.842 5.37e-35 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00895 - K19041 gmx:100799697 404.445
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo1g00895 1 13534036 13536072 Pumo1g00895 1 13534036 13536072 ECH