Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00894 ATGGGGTGTTGTCTAACTAAAGATCCAGAGCCACAACACAATGGTTACAGACATGCTGGGACTGGTGGTGTGCACAACCAGAAGACTCATGAACCTTTGGTCAACCAATCAAGAGCACCTGCAAATCAACCTTATCATTTACCTGAAAAGCATGCTGCATCCACTGCTCAGACAGTGCCTCAGAATATGCCATGGAAACCTTCTGGTCCTGCCCTTAGTCCTAAACCTGTTGTTAGTGCTAAGGAACACACAATTCTTGGAAAGCAGTTTGAGGATGTGAAGCAGTTCTACACACTTGGGAAGGAATTGGGTAGAGGGCAATTTGGGGTGACATATCTTTGCACTGAGAATTCAACTGGGTTGCAGTATGCCTGCAAGTCCATTTCCAAGAGGAAACTTGTGAGCAAATCTGATAAGGAGGACATAAAGAGGGAGATTCAGATTATGCAGCATTTGAGTGGTCAACCCAACATTGTTGAGTTCAAAGGGGCTTATGAGGATAAGAACTCAGTTCATGTTGTGATGGAGCTGTGTGCAGGTGGGGAACTTTTTGATAGGATTATTGCCAAGGGGCATTACAGTGAGAGAGCTGCTGCTTCAATATGCAGACAAATTGTAAATGTTGTTCATATCTGCCATTTCATGGGTGTGATGCATAGGGATCTGAAGCCAGAGAATTTCTTGCTATCTAGTAGGGGCGAAAATGCACTTCTCAAGGCAACTGATTTTGGCCTGTCCGTTTTCATTGAAGAAGGAAAGGTATATCGGGATATAGTTGGTAGTGCTTACTATGTTGCTCCTGAAGTTCTGCGGCGCAGATGTGGGAAGGAAATAGATATATGGAGTGCAGGAGTCATATTGTATATCTTACTTAGTGGAGTCCCTCCATTTTGGGCTGAGACTGAGAAGGGAATATTTGATGCCATATTGGAAGGTCACATTGATTTTGAAAGTCAACCATGGCCTAACATTTCAAACAGTGCCAAGGATCTTGTTCGTAAGATGCTTATACAGGATCCAAAGAAACGCATTACCTCTGCTCAAGTTCTTGAGCACCCATGGATTAAAGATGGAAATGCTTCAGACAAGCCAATAGACAGTGCAGTCCTTTCCAGAATGAAGCAATTCAGAGCAATGAATAAACTAAAGAAACTTGCCTTGAAGGTCATTGCTGAGAATATGTCTGCAGAAGAGATCCAAGGTTTGAAGGCAATGTTTACAAATATGGACACTGACAAGAGTGGTTCAATCACCTATGAAGAACTAAAGGCGGGATTGCAAAGACTTGGCTCAAAGCTTGCAGAGGCTGAAGTGAAGCAGCTTATGGAAGCTGCTGATGTAGATGGAAATGGCACAATTGACTACATAGAATTCATCACTGCTACAATGCATAGACACAAGTTAGAAAGAGATGACCAACTTTCCAAGGCCTTCCAATATTTTGATAAAGACAACAGTGGGTATATTACAAGAGATGAATTGGAAACAGCCATGAAAGAATATGGTATGGGTGATGATGCCACAATCAAGGAAATCATATCTGAAGTTGATACAATTATATCTGAAGTGGATACAGATCATGATGGTAGAATCAATTATGAAGAATTCTCTGCAATGATGAAGAGTGGAAACCAACAAGGAGGCAAACTATTCTAA 1656 0.4185 MGCCLTKDPEPQHNGYRHAGTGGVHNQKTHEPLVNQSRAPANQPYHLPEKHAASTAQTVPQNMPWKPSGPALSPKPVVSAKEHTILGKQFEDVKQFYTLGKELGRGQFGVTYLCTENSTGLQYACKSISKRKLVSKSDKEDIKREIQIMQHLSGQPNIVEFKGAYEDKNSVHVVMELCAGGELFDRIIAKGHYSERAAASICRQIVNVVHICHFMGVMHRDLKPENFLLSSRGENALLKATDFGLSVFIEEGKVYRDIVGSAYYVAPEVLRRRCGKEIDIWSAGVILYILLSGVPPFWAETEKGIFDAILEGHIDFESQPWPNISNSAKDLVRKMLIQDPKKRITSAQVLEHPWIKDGNASDKPIDSAVLSRMKQFRAMNKLKKLALKVIAENMSAEEIQGLKAMFTNMDTDKSGSITYEELKAGLQRLGSKLAEAEVKQLMEAADVDGNGTIDYIEFITATMHRHKLERDDQLSKAFQYFDKDNSGYITRDELETAMKEYGMGDDATIKEIISEVDTIISEVDTDHDGRINYEEFSAMMKSGNQQGGKLF 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00894 551 ProSiteProfiles EF-hand calcium-binding domain profile. 469 504 IPR002048 GO:0005509
Pumo1g00894 551 Gene3D Transferase(Phosphotransferase) domain 1 183 362 - -
Pumo1g00894 551 MobiDBLite consensus disorder prediction 1 28 - -
Pumo1g00894 551 SMART serkin_6 97 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo1g00894 551 FunFam calcium-dependent protein kinase 1 183 362 - -
Pumo1g00894 551 SUPERFAMILY EF-hand 378 542 IPR011992 -
Pumo1g00894 551 ProSiteProfiles EF-hand calcium-binding domain profile. 433 468 IPR002048 GO:0005509
Pumo1g00894 551 Coils Coil 419 439 - -
Pumo1g00894 551 Gene3D - 363 545 - -
Pumo1g00894 551 MobiDBLite consensus disorder prediction 51 77 - -
Pumo1g00894 551 PANTHER SERINE/THREONINE-PROTEIN KINASE 90 536 - -
Pumo1g00894 551 SUPERFAMILY Protein kinase-like (PK-like) 96 375 IPR011009 -
Pumo1g00894 551 ProSitePatterns EF-hand calcium-binding domain. 482 494 IPR018247 -
Pumo1g00894 551 Gene3D Phosphorylase Kinase; domain 1 99 182 - -
Pumo1g00894 551 Pfam Protein kinase domain 97 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo1g00894 551 ProSiteProfiles EF-hand calcium-binding domain profile. 397 432 IPR002048 GO:0005509
Pumo1g00894 551 ProSitePatterns EF-hand calcium-binding domain. 446 458 IPR018247 -
Pumo1g00894 551 CDD EFh 402 461 IPR002048 GO:0005509
Pumo1g00894 551 FunFam Calcium-dependent protein kinase 1 99 182 - -
Pumo1g00894 551 FunFam Calcium-dependent protein kinase 1 362 544 - -
Pumo1g00894 551 SMART efh_1 437 465 IPR002048 GO:0005509
Pumo1g00894 551 SMART efh_1 473 501 IPR002048 GO:0005509
Pumo1g00894 551 SMART efh_1 515 543 IPR002048 GO:0005509
Pumo1g00894 551 SMART efh_1 401 429 IPR002048 GO:0005509
Pumo1g00894 551 CDD STKc_CAMK 96 354 - -
Pumo1g00894 551 ProSitePatterns EF-hand calcium-binding domain. 410 422 IPR018247 -
Pumo1g00894 551 ProSitePatterns Serine/Threonine protein kinases active-site signature. 217 229 IPR008271 GO:0004672|GO:0006468
Pumo1g00894 551 Pfam EF-hand domain pair 402 462 IPR002048 GO:0005509
Pumo1g00894 551 Pfam EF-hand domain pair 472 541 IPR002048 GO:0005509
Pumo1g00894 551 ProSitePatterns Protein kinases ATP-binding region signature. 103 126 IPR017441 GO:0005524
Pumo1g00894 551 ProSitePatterns EF-hand calcium-binding domain. 524 536 IPR018247 -
Pumo1g00894 551 ProSiteProfiles EF-hand calcium-binding domain profile. 511 546 IPR002048 GO:0005509
Pumo1g00894 551 CDD EFh 473 541 IPR002048 GO:0005509
Pumo1g00894 551 ProSiteProfiles Protein kinase domain profile. 97 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00894 Pumo-Chr1 13513084 13519339 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00894 1 551 EF-hand Containing Proteins AT3G20410 73.477 0.0 819
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Pumo1g00894 Pkinase 8.5e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00894 K13412 - gmx:100798651 1073.54