Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00893 ATGGTTGATTTGGAAATCCAGGTGCCCACCCCATTTGACCCATTTGCTGAGGCGATAGAATCTGATGCCCCCGGAGCGAAGGAGTATGTGCATATACGCATTCAGCAGAGGAATGGGAAGAAGAGTCTGACCACAGTGCAAGGGCTGAAGAAGGAGTTCAGCTACGAGAAGATCCTCAAGGACCTCAAGAAAGAGTTCTGCTGCAACGGCAATGTGGTGCAGGACAAGGAGCTTGGCAAGATAATCCAACTCCAAGGTGACCAGCGCAAGAACGTCTCTCATTTCCTCGTTCAGGCTGGCCTTGTCAGGAAGGACCAGATCAAGATTCATGGTTTTTGA 339 0.5015 MVDLEIQVPTPFDPFAEAIESDAPGAKEYVHIRIQQRNGKKSLTTVQGLKKEFSYEKILKDLKKEFCCNGNVVQDKELGKIIQLQGDQRKNVSHFLVQAGLVRKDQIKIHGF 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00893 112 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 8 112 - -
Pumo1g00893 112 CDD eIF1_SUI1 28 111 IPR005874 GO:0003743
Pumo1g00893 112 Gene3D - 1 112 - -
Pumo1g00893 112 PIRSF Transl_init_SUI1_Euk 1 112 IPR005874 GO:0003743
Pumo1g00893 112 NCBIfam translation initiation factor SUI1 5 112 IPR005874 GO:0003743
Pumo1g00893 112 Pfam Translation initiation factor SUI1 27 100 IPR001950 GO:0003743|GO:0006413
Pumo1g00893 112 FunFam Eukaryotic translation initiation factor SUI1 2 112 - -
Pumo1g00893 112 SUPERFAMILY eIF1-like 3 112 IPR036877 GO:0003743|GO:0006413
Pumo1g00893 112 ProSiteProfiles Translation initiation factor SUI1 family profile. 30 100 IPR001950 GO:0003743|GO:0006413
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00893 Pumo-Chr1 13509835 13511224 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00893 1 112 Eukaryotic Initiation Factors Gene Family AT5G54940 83.036 4.12e-68 198
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00893 K03113 - gmx:100791423 222.246