Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00891 ATGCCCTCTGCCCAGGATCCATTTTACGTTGTCAAGGCCGAGATACAAGATTCGATTGATAAGCTGCAATCTACTTTTCACCAATGGGAAAGAAAATCCGACGCAGCGGAACAAGGACATCTTACGAAGGAGGTTCTTGCTGGATGCGAAAGCATAGAGTGGCAGGTGGATGAATTGGATAAAGCAATTGCTGTAGCGTCTAGAGATCCTTCTTGGTATGGAATTGATGAAGCTGAGGTTGAAAGCCGAAGGAGATGGACAAGCAGCGCTCGTTCTCAGGTTGGCACAATGAAGAAAGCAGTGGAAGCTGGAAAGGGCTCAAGTACCACAAGCCATGCTAGTGTAAATGGGATGCGCCGAGAACTAATGAGGGTACCAAATTCTCATCAAACTGATAGCTCCAACCAGTATGCTGCCCGAGATAATGATGATTTCATACAATCAGAATCAGATAGACAAATGCTTCTTATAAAGAGACAGGATGAGGAATTGGATGAGCTTACTGAAAGTGTACGAAGAATTGGAGGTGTTGGACTTACAATACATGATGAACTCACTGCACAGGACAAGATTCTAGATGAACTCGGTTCTGAGATGGACAGTACAACAAATCGTCTTGATTTTGTCCAAAAAAAAGTGGCAATGGTTATGAAGAAGGCTAGTGCAAAGGGTCAGATCATGATGATATGTGGTTTGTTGGCCCTGTTCATCGTCCTCTTTATCTTAGTATTCTTCACCTAG 741 0.4359 MPSAQDPFYVVKAEIQDSIDKLQSTFHQWERKSDAAEQGHLTKEVLAGCESIEWQVDELDKAIAVASRDPSWYGIDEAEVESRRRWTSSARSQVGTMKKAVEAGKGSSTTSHASVNGMRRELMRVPNSHQTDSSNQYAARDNDDFIQSESDRQMLLIKRQDEELDELTESVRRIGGVGLTIHDELTAQDKILDELGSEMDSTTNRLDFVQKKVAMVMKKASAKGQIMMICGLLALFIVLFILVFFT 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00891 246 Pfam SNARE domain 191 242 IPR000727 -
Pumo1g00891 246 CDD SNARE_NTD_AtSYP61-like 5 102 - -
Pumo1g00891 246 CDD SNARE_Qc 157 214 - -
Pumo1g00891 246 FunFam syntaxin-61 isoform X1 157 218 - -
Pumo1g00891 246 Gene3D - 161 225 - -
Pumo1g00891 246 MobiDBLite consensus disorder prediction 88 113 - -
Pumo1g00891 246 Coils Coil 12 32 - -
Pumo1g00891 246 PANTHER GOLGI SNARE BET1-RELATED 121 242 - -
Pumo1g00891 246 Pfam Syntaxin 6, N-terminal 6 98 IPR015260 GO:0016020|GO:0048193
Pumo1g00891 246 SUPERFAMILY SNARE fusion complex 152 216 - -
Pumo1g00891 246 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 154 216 IPR000727 -
Pumo1g00891 246 Coils Coil 192 212 - -
Pumo1g00891 246 SUPERFAMILY t-snare proteins 5 101 IPR010989 GO:0016020|GO:0016192
Pumo1g00891 246 SMART tSNARE_6 149 216 IPR000727 -
Pumo1g00891 246 FunFam Syntaxin 10 3 104 - -
Pumo1g00891 246 Gene3D - 2 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00891 Pumo-Chr1 13497718 13501776 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00891 55 246 SNARE and Associated Proteins AT1G28490 70.833 1.76e-97 281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00891 K08500 - gmx:100787129 426.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo1g00891 1 13497718 13501776 Pumo9g01892 9 48095327 48099251 PCT