Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00888 ATGTTTTCCTTCTCAAAACCCAACCTTTCTCCGGTTCGCCCCACCCTCCCTCCGGTTCGCTGCGGCATCCGCGAGCTCCGCGAACGAATCCAAACCGTCCAAACCACCCAAAAGATCACCGAAGCCATGAAACTCGTCGCCGTTGCGCGCGTCCGCCGCGCCCAGGAGGCCGTCGTCAGCGGCCGCCCTTTCTCCTCACACCTCGCCGCAATGCTGAACGACATCACCCAGCGCCTCCAAAACGACGACGTCTCCACCCCTCTCACCCACGCCAGACCCGTCAAAACCGTCGCCCTCGTCGTCGTCACCAGCGACCGCGGCCTCTGCGGCGGTTTCAACAAATCGGTAATCAGAAAAGCCCTCACCCGAATCGAGGAGTTGAAAAAACTCAACTTGGGGTGCGTTGTAATCAGCGTTGGCAAAAAGGGTAACAACTCGTTTTTCACTCACAATAACAAAAAGAGACACCCTTTTGTTAAAGTTGATAGCTTTATCGAAATTGGTGGTTTTCCCACCGCAAAGGAGGCTCAGGTTATCGCTGATGATGTTTTTTCACTGTTTGTTACTGAGGAGGTTGATAAGGTTGAGCTTTTGTACACTAAGTTTGTTTCATTGGTTAGGTTTGAGCCTGTGGTTCACACTTTGTTGCCTTTGGGGGAGGTTTGTGATGTGAAAGATGAGATTTTTAGGTTGAGTAGTAAAGAGGGGAAGTTGGCTGTGGAGAGAGATGTTGTGAGGTTGAGGAAAGAGGGTGAGGTGTTTTCTCCTCTCATGGAGTTTGAGCAGGATCCTGTTATGATTCTTGATGCCATGTTGCCTCTTTATTTGAATAGTCAGGTTTTGAGGGGGCTGCAGGAGTCTGTGGCTAGTGAGCTTGCTGCTAGGATGGGGGCCATGGCTGCTGCCACGGATAACGCGGTTGAGTTGAGGAAGAGCCTTTCGGTAGAGTACAATAGGGAGCGGCAGGCGAAGATCACCGGGGAGATGTTGGAGATTGTGGCTGGAGCTGAGGCACTAAAACAAATTGACTGA 1032 0.5165 MFSFSKPNLSPVRPTLPPVRCGIRELRERIQTVQTTQKITEAMKLVAVARVRRAQEAVVSGRPFSSHLAAMLNDITQRLQNDDVSTPLTHARPVKTVALVVVTSDRGLCGGFNKSVIRKALTRIEELKKLNLGCVVISVGKKGNNSFFTHNNKKRHPFVKVDSFIEIGGFPTAKEAQVIADDVFSLFVTEEVDKVELLYTKFVSLVRFEPVVHTLLPLGEVCDVKDEIFRLSSKEGKLAVERDVVRLRKEGEVFSPLMEFEQDPVMILDAMLPLYLNSQVLRGLQESVASELAARMGAMAAATDNAVELRKSLSVEYNRERQAKITGEMLEIVAGAEALKQID 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00888 343 FunFam ATP synthase gamma chain 87 219 - -
Pumo1g00888 343 Gene3D ATP synthase, gamma subunit, helix hairpin domain 22 89 - -
Pumo1g00888 343 Gene3D - 90 219 - -
Pumo1g00888 343 FunFam ATP synthase gamma chain, chloroplastic 21 88 - -
Pumo1g00888 343 NCBIfam ATP synthase F1 subunit gamma 23 339 IPR000131 GO:0015986|GO:0045261|GO:0046933
Pumo1g00888 343 PANTHER ATP SYNTHASE GAMMA CHAIN 20 339 IPR000131 GO:0015986|GO:0045261|GO:0046933
Pumo1g00888 343 Hamap ATP synthase gamma chain [atpG]. 20 339 IPR000131 GO:0015986|GO:0045261|GO:0046933
Pumo1g00888 343 SUPERFAMILY ATP synthase (F1-ATPase), gamma subunit 24 339 IPR035968 GO:0015986|GO:0045261|GO:0046933
Pumo1g00888 343 FunFam ATP synthase gamma chain, chloroplastic 234 339 - -
Pumo1g00888 343 PRINTS ATP synthase gamma subunit signature 193 210 IPR000131 GO:0015986|GO:0045261|GO:0046933
Pumo1g00888 343 PRINTS ATP synthase gamma subunit signature 317 338 IPR000131 GO:0015986|GO:0045261|GO:0046933
Pumo1g00888 343 PRINTS ATP synthase gamma subunit signature 94 113 IPR000131 GO:0015986|GO:0045261|GO:0046933
Pumo1g00888 343 PRINTS ATP synthase gamma subunit signature 286 305 IPR000131 GO:0015986|GO:0045261|GO:0046933
Pumo1g00888 343 Gene3D ATP synthase, gamma subunit, helix hairpin domain 238 339 - -
Pumo1g00888 343 ProSitePatterns ATP synthase gamma subunit signature. 325 338 IPR023632 -
Pumo1g00888 343 Pfam ATP synthase 23 339 IPR000131 GO:0015986|GO:0045261|GO:0046933
Pumo1g00888 343 CDD F1-ATPase_gamma 23 336 IPR000131 GO:0015986|GO:0045261|GO:0046933
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00888 Pumo-Chr1 13482358 13484398 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00888 2 341 Primary Pumps ATPases AT1G15700 64.124 6.42e-149 423
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00888 K02115 - gmx:100797879 569.696