Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00886 ATGGAGGGTATGGCAAACATCGATGATGCAGCCAATGGTGAAAATGGGTTCCTAGCAATGTTTGGTGGCAATGAAGGCGGTGGCGGTGGCAGTGGTGGAAGCGGCGGTGAGGGTGGTGGCAATGTGGAGGAGGTGGCTCTGAAGAAGGGTCCTTGGACAACTGCAGAGGATGCTATCCTCATGGATTATGTGACAAAGCATGGTGAAGGGAATTGGAATGCAGTGCAGAGGAACACAGGGTTGAATAGATGTGGCAAGAGTTGTAGGCTTAGGTGGGCTAACCATTTGAGGCCCAATTTGAAGAAGGGTGCATTCTCACCTGAGGAAGAGAAGCTCATTGTTGATCTTCATGCACAGTTTGGCAACAAATGGGCCAGAATGGCTGCTCTGTTGCCTGGAAGAACAGACAACGAAATCAAGAACTATTGGAACACAAGGATCAAACGCCGCCAAAGGCAGGGTCTCCCTCTCTATTCAGACGACCATGATCATCACCATCGTCCCACAACACCAACCCCTCCCACCACACCTTCCCCATGCCTCACCCCATCAGGATCAAACCCCAACATTGCCACAAATTTTGAGTTCTTCAATCAAAACCAACAACAACAACAACAATACCAACAACAATATCAACAACACCAATACCAACAACAACAACACCCTCTTTCTCCAACTGCACATCATCATTCCCCTCTCAGTTCCCCTATCCAACACAGACAACCCTTCACCTCTTCATCACCTCACACTTTCTTAGACCCTTCACCTCTTCCACTCTCCTCCTCTTCACCCTCCCCTCTCTCCTTCACCTTCCAAAGACCAGCACCAATGCTAAGCACCCCTCTTCGCTTCAAGCGCTACCACGCCTCTCCAAGCTACAACCACCTCTCTGACCCTCCTCTCACCACCCAATTCCCTCACCTTGATGGATTCAGGTTCCCAGTTTCTTCAGGTTTTTCTCAGTTTTTTCAGCCTTCTTTGTCAGACTCCAATCGAGGGGTTTCTTCTTCTTCCTCTTCAGCTTTCCATCCCAAGTTGGAGCTCCCTTCAAGCCAGTATTATAAACCACCCCAAGAGCAAGACATCAAGCTTGACATTGAGTTCAATGATCCTTCTTTTCAAACTAGTAGTGGCTTGCTGGGGGATCTTCTCTTCGAGGCTCAGGCACTGGCTTCAGGCCAGAACTCAAAGAAACGTGCACCCAAACCAAAGGAAGAAACACCGGACTTTAGCAAATTCATGAATGAGGACTTGTCATCATTGCTTACAGTGATTCCATCTTCCAATATGCAGGGTCATGAGTGGCACAATAATAGTGCCCCAGAAGTGTCCAATGTCCAATCCTCTGGTAGTGGCATGACAGATGACAATTTTGGACTTGATATCAAGCCCATAGCTTCATTGTTTCCTCTCTCCAACACCACAAACCATAATGAAAACCAAGGATGCTACTCTTGGGACAATTTGCCTGGTCTCTGCTAA 1482 0.4798 MEGMANIDDAANGENGFLAMFGGNEGGGGGSGGSGGEGGGNVEEVALKKGPWTTAEDAILMDYVTKHGEGNWNAVQRNTGLNRCGKSCRLRWANHLRPNLKKGAFSPEEEKLIVDLHAQFGNKWARMAALLPGRTDNEIKNYWNTRIKRRQRQGLPLYSDDHDHHHRPTTPTPPTTPSPCLTPSGSNPNIATNFEFFNQNQQQQQQYQQQYQQHQYQQQQHPLSPTAHHHSPLSSPIQHRQPFTSSSPHTFLDPSPLPLSSSSPSPLSFTFQRPAPMLSTPLRFKRYHASPSYNHLSDPPLTTQFPHLDGFRFPVSSGFSQFFQPSLSDSNRGVSSSSSSAFHPKLELPSSQYYKPPQEQDIKLDIEFNDPSFQTSSGLLGDLLFEAQALASGQNSKKRAPKPKEETPDFSKFMNEDLSSLLTVIPSSNMQGHEWHNNSAPEVSNVQSSGSGMTDDNFGLDIKPIASLFPLSNTTNHNENQGCYSWDNLPGLC 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00886 493 FunFam MYB-related transcription factor 48 101 - -
Pumo1g00886 493 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 28 453 - -
Pumo1g00886 493 MobiDBLite consensus disorder prediction 333 353 - -
Pumo1g00886 493 Gene3D - 48 101 - -
Pumo1g00886 493 ProSiteProfiles Myb-like domain profile. 97 147 IPR001005 -
Pumo1g00886 493 Gene3D - 104 166 - -
Pumo1g00886 493 ProSiteProfiles Myb-like domain profile. 44 96 IPR001005 -
Pumo1g00886 493 MobiDBLite consensus disorder prediction 182 268 - -
Pumo1g00886 493 MobiDBLite consensus disorder prediction 22 43 - -
Pumo1g00886 493 CDD SANT 51 96 IPR001005 -
Pumo1g00886 493 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 97 151 IPR017930 -
Pumo1g00886 493 CDD SANT 104 145 IPR001005 -
Pumo1g00886 493 SUPERFAMILY Homeodomain-like 47 143 IPR009057 -
Pumo1g00886 493 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 44 96 IPR017930 -
Pumo1g00886 493 Pfam Myb-like DNA-binding domain 49 96 IPR001005 -
Pumo1g00886 493 Pfam Myb-like DNA-binding domain 102 145 IPR001005 -
Pumo1g00886 493 SMART sant 101 149 IPR001005 -
Pumo1g00886 493 SMART sant 48 98 IPR001005 -
Pumo1g00886 493 FunFam Transcription factor GAMYB 104 150 - -
Pumo1g00886 493 MobiDBLite consensus disorder prediction 157 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00886 Pumo-Chr1 13463414 13466568 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00886 29 493 MYB Transcription Factor Family AT4G26930 35.504 4.14e-70 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo1g00886 Myb_DNA-binding 1.4e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00886 - - gmx:102659401 756.903