Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00876 ATGAAGAAGATGTGGCTTTCGGATCATCGGTTGTTTCTTCTCTGCATTCTTTGTGGGCTCTGTTTTTCTCTGCAGTTCACAAGGGGTCATGTAGATTCAAGTTCTGGAAGAACTGTGATTCAGGAGGATGGTAATCATCAAATACATTGTTCTAGAGAAAGAAGTAGAACAGCTTGGAAGATCATTCAAGAGTATTTGATGCCCTTTGTGGAGAAGGAAAAATATCATATTTCAAAAAGGTGTAGGCTTCACCCTGACAATGACATATACAGAGATCAGGAGCAACATAAGTTTCATATAGATATAAACGAATGGCAGTGTGGGTACTGTAAGAAAAGTTTCTATGAAGAGAAACATCTTGATCAGCATTTTGACAACAGACACTCCAATTTGCTTAATTTGAGTGAAAGCCATTGCTTAGCAGATGTATGTGGTGCACTGCACTGTGACCATGAATTGAATTCTGGATCAAAAAAATCAAAGTGCAATCCTGCTGCTGCTGCAAGAAATAAACATCTATGTGAGAGCTTAGCCGATAGTTGTTTTCCAGTCAATGAGGGCCCTGCGGCAAGCCGACTTCATGAATTCTTCTTGCACCAATTCTGTGATGCACATAGCTGCACTGGAAGTAGGAAACCTTTCTCCAGAGGGCGCAGGAAGAAGACAAATGTGTTCTACATCGTTGTGTCTATTTTGCTTGTGATACTGCTGCTACTATACTATCTCTACATTTACTTATATCAGAGAGGAATGAAAAGGGAAATGCAAGTGCTGAAGCGCATCTCACAAGCCAGCAGAAAGAAAAAGCCATCTTAA 816 0.4032 MKKMWLSDHRLFLLCILCGLCFSLQFTRGHVDSSSGRTVIQEDGNHQIHCSRERSRTAWKIIQEYLMPFVEKEKYHISKRCRLHPDNDIYRDQEQHKFHIDINEWQCGYCKKSFYEEKHLDQHFDNRHSNLLNLSESHCLADVCGALHCDHELNSGSKKSKCNPAAAARNKHLCESLADSCFPVNEGPAASRLHEFFLHQFCDAHSCTGSRKPFSRGRRKKTNVFYIVVSILLVILLLLYYLYIYLYQRGMKREMQVLKRISQASRKKKPS 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00876 271 ProSitePatterns Zinc finger C2H2 type domain signature. 107 128 IPR013087 -
Pumo1g00876 271 ProSiteProfiles Zinc finger C2H2 type domain profile. 105 130 IPR013087 -
Pumo1g00876 271 PANTHER ZINC FINGER PROTEIN-RELATED 9 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00876 Pumo-Chr1 13391428 13396194 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00876 27 271 C2H2 Transcription Factor Family AT5G63280 60.484 4.14e-108 312
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo1g00876 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00876 - - gmx:100527694 502.671