Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00872 ATGAAGAAATTGGGGCAAGTGGTGACGAATGTGGTGATTGATGCTGCAGAGCCTGTGGCTGCTGAGCATTTGCGTCCACGCTTAAGGAATGCAATGAATGCGGTCATAAACGTCCCTAAAGATGTAAAAGACATGAGAAAAAAACTTGATGAGATTCAAGTCAGCATTCATGATGTAGATAAGAAGGCAGCAGATGAAGAAGCAGGCAACTCACGTGATGGAACCAAGGCAAAGGTGAAGAAGCTGGTGGAAACATCTTTTCGCATGGAAGATATCATTGATGAATACGCCATCAATGAGGAAAGGCAGCTTCGTGATGATCCTGGGTGTGTAGCTTTTCCTTGCAAGGCTGTTGACTTCATCAAAACTGTGGCCTCTCGTCTTCATTTTGCGTATATAAATGAAGGTGTTAAATCAGAATTTGGTGGAAACAGTGACAGGAATGGAAGTGAGGGTGGCTCCCTAACGCATCCTCATCCTCATCCTCCTGGAGGAAGCCAAAACCCGACATTGGAAAACCTTCGAGATGCTCCTTCTTACATAGAAGAAGATGATGTTGTGGGCTTTGAAGAGGCGAGAGATGAATTGATTGATTGGCTAGTAAGTCCACCGAAAAAAGAAGATGGCCTTGTCAGCTTTAAGCGCACTGTCATCTCTGTGGTAGGAATGGGAGGACAAGGAAAAACAACTCTTGCCAGGAGGGTTTTTGACAGCAAGAAGGTGATCGAGCACTTCAGTTGCTATGCATGGATCACAGTGTCTCAGTCCTACACAGTAGAAGGATTGTTGATGGACATGTTGCAGCAGTTGTGCAATGAAAAAAAGGAGAATCTTCCACAAAATGTTTCTGCAATGGATCGAAAGTCACTGAGAAATGAAGTGAGAAAGCACTTGAAAGAGAGGTATGTGGTTGTGTTTGATGACGTATGGAATGTAGATTTTTGGGATGAAATGGAATATGCTTTAATAGATAATAAAAAAGGAAGTAGGATATTTATCACAACCAGAAACAAGGATGTTCCTATTTTCTGTATGAGATCTGCTGTTATTCAAGTGCATGAGCTGCAACCTTTAACTCCTGAACAATCTTTGAAATTGTTTTATAAAAAGGCGTTTGGATCTGACTTGGATGGACAATGTCCAAACCATCTTGAGGACATATCCGCTGAAATCGTTGAAAAGTGCGAAGGTTTGCCACTGGCAATTGTGGTCATTGGTGGTGTTTTATCTCGCAAAGGAAGAGATGCACTCGATTGGAAAAAGTTCAGTGAAAATCTAAGCAAAGAATTAGGAAAAGATCGCCATCTTTTTCCTGTGATGAAAATTCTGAGTTTCAGTTATCATGATTTGCCTGACCATCTCAAACCATGCTTCTTGTATTTCGGAGTATATCCAGAAGATTATGAAGTTGAAAATGTAAGATTGATTCGACAATGGGTAGCTGAGGGGTTTGTCAAAAATGACGCCACCAAAATTTTAGAGGAAGTTGCAGAACAATATCTAACTGAGTTGATCCAGAGAAGTTTGGTTCAAGTATCTTCATTTACTAGCTGTGGCAAAACTAAAAGTTGTCGTGTTCATGACTTGGTTCGAGACATGATCCTTAAAAAAATTGAAGATTTAAGTTTTTGCCATTTTGCTAGTGAGCATGATATATTGGCAGGAGGCGAGATGGTTCGTCGCTTAACAATAGCATCTGGTTCCAACAATTGGATGGAAAGTGAGAAAAGCTCAAACATTCGATCACTGCATGTTTTTAGGGATGAAGAATTATCAGAATCCTTTGTGAGAAGTATTCCTACGAAGTACAAGCTACTAAAGTTAAGGGAGCTGGGCTTGACTAATGTTCAGCAAGGATTCACAAATGTTCTATGCTCCTTGATAAACAAGATGGAACACATGGAGAAGCTATACATTGCTGCAACAAATGAACATGAAGTCATTGATTTGGATTTTAATGTATCTGCACCTGCGCCTGCACTTCAGAAGCTTCGTCTCGTAGGGAGGTTAAACAGATTCCCAAACTGGGTTGGAAGGCTCCAAAATCTTGTTATGTTGTCTTTGTCACACTCCAAGTTAACTGATGATCCATTGGCAGTACTCAAAGATCTACCGAATTTGTTGTGCCTCAGTATCCTCTACTGTGCATATGAAGGAGAATGTTTGCATTTTCCAAATGGTGGGTTTCTGAAGCTAGAGAAAATAGTACTCAGGCGCTTGTATAACTTGAATTCCATCCTTATTGATAATGGAGCATTGCCTTCTCTCAAAAAGTTCAAGTTAGTCAATATCCCCAAACTCACGGAGGTGCTTTTTGGTGTCTACAACTTACCAAAGCTTGAGGTTTTCCATGTTATTAATATGTCAAATGAATTTGAAGAAAGTTTTCATCACAACAGAGGAGAACGTCAATGGATAATAGAGCAGGTGCCTTTTGTAAGTATTGATGATCGATTTTGGGCATGA 2466 0.4039 MKKLGQVVTNVVIDAAEPVAAEHLRPRLRNAMNAVINVPKDVKDMRKKLDEIQVSIHDVDKKAADEEAGNSRDGTKAKVKKLVETSFRMEDIIDEYAINEERQLRDDPGCVAFPCKAVDFIKTVASRLHFAYINEGVKSEFGGNSDRNGSEGGSLTHPHPHPPGGSQNPTLENLRDAPSYIEEDDVVGFEEARDELIDWLVSPPKKEDGLVSFKRTVISVVGMGGQGKTTLARRVFDSKKVIEHFSCYAWITVSQSYTVEGLLMDMLQQLCNEKKENLPQNVSAMDRKSLRNEVRKHLKERYVVVFDDVWNVDFWDEMEYALIDNKKGSRIFITTRNKDVPIFCMRSAVIQVHELQPLTPEQSLKLFYKKAFGSDLDGQCPNHLEDISAEIVEKCEGLPLAIVVIGGVLSRKGRDALDWKKFSENLSKELGKDRHLFPVMKILSFSYHDLPDHLKPCFLYFGVYPEDYEVENVRLIRQWVAEGFVKNDATKILEEVAEQYLTELIQRSLVQVSSFTSCGKTKSCRVHDLVRDMILKKIEDLSFCHFASEHDILAGGEMVRRLTIASGSNNWMESEKSSNIRSLHVFRDEELSESFVRSIPTKYKLLKLRELGLTNVQQGFTNVLCSLINKMEHMEKLYIAATNEHEVIDLDFNVSAPAPALQKLRLVGRLNRFPNWVGRLQNLVMLSLSHSKLTDDPLAVLKDLPNLLCLSILYCAYEGECLHFPNGGFLKLEKIVLRRLYNLNSILIDNGALPSLKKFKLVNIPKLTEVLFGVYNLPKLEVFHVINMSNEFEESFHHNRGERQWIIEQVPFVSIDDRFWA 821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00872 821 Gene3D - 19 131 - -
Pumo1g00872 821 FunFam Probable disease resistance protein At1g61300 170 347 - -
Pumo1g00872 821 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 168 461 IPR027417 -
Pumo1g00872 821 Pfam Rx N-terminal domain 22 103 IPR041118 -
Pumo1g00872 821 Gene3D - 175 348 IPR027417 -
Pumo1g00872 821 Gene3D - 358 446 IPR042197 -
Pumo1g00872 821 SUPERFAMILY L domain-like 525 800 - -
Pumo1g00872 821 PANTHER DISEASE RESISTANCE PROTEIN RP 46 785 IPR044974 GO:0006952
Pumo1g00872 821 PRINTS Disease resistance protein signature 678 694 - -
Pumo1g00872 821 PRINTS Disease resistance protein signature 296 310 - -
Pumo1g00872 821 PRINTS Disease resistance protein signature 217 232 - -
Pumo1g00872 821 PRINTS Disease resistance protein signature 395 409 - -
Pumo1g00872 821 Gene3D Ribonuclease Inhibitor 558 804 IPR032675 -
Pumo1g00872 821 FunFam Probable disease resistance protein At1g63360 447 536 - -
Pumo1g00872 821 Gene3D - 447 538 IPR036388 -
Pumo1g00872 821 MobiDBLite consensus disorder prediction 141 173 - -
Pumo1g00872 821 Pfam NB-ARC domain 212 448 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00872 Pumo-Chr1 13339947 13343381 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00872 218 533 WRKY Transcription Factor Family AT5G45050 24.375 2.53e-09 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00872 K13457 - gmx:102663437 715.687