Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00870 ATGGAAAGGGCAGCGTCCTGGGCTATTGATCATTTGCTGACACCCTTAAGTGATCTTTTGCTTCCACACTTATGGAAAGCAGTGAATACGGTAAAGGAGGTCCCAAAAGACGCTCAAGACTTGAAAGCCAAATTTGATGGGATTCAAGACATCATTCATGATGCAGATAGAAGGGCAGAAGCGGAAGAAGGCAAAACACGTGACGCAATCAAAGCAAAGGTGAAGCAGCTAATGGAGACATCCTTTCGCATGGAAGATATCATTGATGGATTCTGTGAGGAAAGCCAGCAGCAGCTTGGTGATGGTGGATGTACAGCTTTACCTTGTAAGATTGTTGACTTGGTCAAAACTATGCCCTCTCGTCTTCATTTTTCTTACATGAGCCAGGGAGTTAAATCAGAAATTGGTGGAATCAAGGACGGGAATATTAAAATTGAGGATCTCCACGAAGTGCAATTATTCATAAGAAACCAAAAGGCCATGTTCGATAACCTTCGATTGGCTCCTTCTTTCATTAAGGAAGAAGAAGTTGTGGGCTTCCAAGACCCGAGAGCTGAATTGATTGATCGCTTAGTAGGTGGAGACTCAAGGCTCACTGTCATCCCTGTGGTAGGAATGGGAGGGCAAGGAAAAACAACTCTTGCCAGGAAAGTTTTTGACAAGAGGGAGGTGAAGGATCGCTTCATTTGCCATGCATGGATCACAGTGTCTGAGTTTGACACAGCAGAAGAATTGTTGAAGGACATGTTGCAGAAGTTGTGCGAGAATCCTCCTGAGAATGTTTCTACCCTGGACCGAGCATCATTGATACTTGGGGTGAGTAATCGCTTGCAAAACAAGTATGTTGTTGTGTTTGATGAAGTATGGAATGAAACTTTTTGGTGTGAACTGGAAGCTGCTTTAATAGATAATAACAATGGAAGTAGAATAGTTATCACAACCAGGAACAAGAGGGTTGCAATGTCCTGTAGGGGATCTTCTATAGGACGAACTCCTCCTTTAGTTCATCCAGATCTCGAGCTACAACCTTTAACTCTTGAGAAATCTTTGGAATTGTTTGATAGAATGGCTTTTGGGTCTGACTTGGATCCACATTGTCCAGACAATCTGAAGGACATGTCCTTTGAAATTGTTAAAAAGTGTGAAGGTTTACCACTAGCAATTGTGGCCATTGGTGGTGCTTTAGCTCGTAATAACAAAGATATAGTTGAATGGCGAAGGTTTAGTCAAAATCCAAGTTTAGAATTAGGGAGCAATCCCTATTGTTTTCCTCTGACAAAGATTTTGGCTTTTAGTTTTCATGATTTGCCTTATTATCTCAAACCATGCTTCTTGTATTTTGGAATGTATCCAGAAGATTATGAAGTTGAATGTGTGAGATTAATTAAACAATGGGTAGCTGAGGGGTTTGTCAAATTCAAAGCGAACAGAACTCCAGAGGAAGTTGCAGAACAATATTTAAATGAGTTGATCCAAAGAAGTTTGGTTCAAGTATCTTCATCTACTAGTGATGGCAAAGCTGAAAGATGTCGTGTTCATTACATGTTACGACACATGATCCTTTAA 1566 0.4093 MERAASWAIDHLLTPLSDLLLPHLWKAVNTVKEVPKDAQDLKAKFDGIQDIIHDADRRAEAEEGKTRDAIKAKVKQLMETSFRMEDIIDGFCEESQQQLGDGGCTALPCKIVDLVKTMPSRLHFSYMSQGVKSEIGGIKDGNIKIEDLHEVQLFIRNQKAMFDNLRLAPSFIKEEEVVGFQDPRAELIDRLVGGDSRLTVIPVVGMGGQGKTTLARKVFDKREVKDRFICHAWITVSEFDTAEELLKDMLQKLCENPPENVSTLDRASLILGVSNRLQNKYVVVFDEVWNETFWCELEAALIDNNNGSRIVITTRNKRVAMSCRGSSIGRTPPLVHPDLELQPLTLEKSLELFDRMAFGSDLDPHCPDNLKDMSFEIVKKCEGLPLAIVAIGGALARNNKDIVEWRRFSQNPSLELGSNPYCFPLTKILAFSFHDLPYYLKPCFLYFGMYPEDYEVECVRLIKQWVAEGFVKFKANRTPEEVAEQYLNELIQRSLVQVSSSTSDGKAERCRVHYMLRHMIL 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00870 521 FunFam Probable disease resistance protein At1g61300 163 326 - -
Pumo1g00870 521 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 160 447 IPR027417 -
Pumo1g00870 521 PANTHER DISEASE RESISTANCE PROTEIN RP 46 520 IPR044974 GO:0006952
Pumo1g00870 521 PRINTS Disease resistance protein signature 200 215 - -
Pumo1g00870 521 PRINTS Disease resistance protein signature 381 395 - -
Pumo1g00870 521 PRINTS Disease resistance protein signature 275 289 - -
Pumo1g00870 521 Gene3D - 433 521 IPR036388 -
Pumo1g00870 521 Gene3D - 8 124 - -
Pumo1g00870 521 Pfam NB-ARC domain 185 411 IPR002182 GO:0043531
Pumo1g00870 521 Gene3D - 344 432 IPR042197 -
Pumo1g00870 521 FunFam Probable disease resistance protein At1g63360 433 521 - -
Pumo1g00870 521 Pfam Rx N-terminal domain 13 98 IPR041118 -
Pumo1g00870 521 Gene3D - 169 328 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00870 Pumo-Chr1 13295107 13296672 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00870 201 395 WRKY Transcription Factor Family AT5G45050 29.798 4.39e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00870 K13457 - gmx:102667903 565.074