Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00855 ATGTGTGCCTCTCATATTTATTTACCACTATTAAAAAATGCTACTTTTCCCCTGTTTCAAGATAATGGCAATGGTAGAATGGATCAAGAAAACCAGGAAAAGGAGCCTAAGTGCTCTGAAGTTGTTGATTCTGATTTTTTGGATCCCAAGGATCCTATACACCAGAAGGATATAAAGGAGGTCCAGGAAACCATTGAGGGGGTTGGAGACAAGGATATGGATTTTACTTCCAACAAGATGGTCCTAGATGATATAGAACTTATGATGGGAATAGAGGACATGTCTACCCAAGCAAATGGTTTTGATAAGGAGCAGAAGCTAATGAATGAGTTTGAGCTGGTAATGAAACGAACTGAAGATCTTATTTGTGATAGTGAATTGATCCCCTTGAACTTGGGATTAGAAGAGAAACATAATGATGGAGGTGAAGTTGGGTTGACGGATTACCAAGTAGAAATGGAAGAAGGAGAAATTTCTGGAGACTTGGGAATAGATGGAAATTCATTTGATGTGGCTTCTGCAGATGCTTTAATTTTACAACAGATGGAAGTAGATGAGGTTCAGAAGCCTGAAAATGTAACTGGAAACATGATATATCCTTCTAAGATTGAGAATCAAGAAAAGGAAACAGGCTATGACTCTAATTCCTCTATGGTAAATGCACTTCAAGATGCCGATAATAGTGTACAAGTGGAGCCTAGAACTAGTGGCAAGAAAGGTATTGCATGCGGAGTTGAAGTAGCAATTTCTCAAAAAACTATTGAATGTCAGAAGGAATATAAAACAAAGTTGGATAACGCCAGTAAAAAGAGTAAGCGTGGTGGGAACAAAGGAAAAAAGAAGAATGGTCTGTTTTTGCAATTTCTGCAATGTAGTAATATATATGATATCCATATTGGAAAAATATCAAATCATTCTTACTTCCTTTTCTCTTGCCTTATTCCAAAACAAAATTGGCAGGGTGACAAGTGTCAGTTTTCACATGATGCAGTGCCTCTAACAAAATCCAAGCCATGTACTCATTTTGCTCGTCACTCTTGCATGAAAGGGGATGATTGTCCATTTGATCACCAGCTCTCAAAATATCCTTGTACCAATTTTGTGTCCAAAGGCTCTTGTTATAGAGGTGATGCTTGCTTGTTTTCTCACCAGGTACCAACCAAAGAAGATATCCCGACGCCTTCAAATATGAGCAGACCAGAATTGTCTCCACTTCTGTCAGGAAATGCAAATTCCAGCACACCACTTAACAACAATCATGGCTCTAGTTCTGTCCAGCAAAACCGCTTTACTAATTCTGCAGGAATTCATTCTTGCACCAGTGTTGAACATAAGGTGACAAACACTGTACAGAAACAGCCTACACCACCTAAAGGAATTAGTTTCATCAATCTTGCAAAATTATCACCCAGCCTTAGTTCACTGAAACAAGGCACAGTAACAACCAAGGAAAGTCCTGTACAAATTAGGACCCGTCAAGATCAAAGTGCATTTGACAAAACACAAAACAAGGTGGAGATTCCTAAGAAATTGCCAGCTGTGACACCTAAGGGAATAAACTTTCTTTCTTTTGGCAAAGGCTCTGTCTGCAGTTTTAAAAGTGCTATTCCTTCCAATGTGAATTGGGAAAATGGTATCAAGTTGCCCCAGTTACTCAGTTTTGGTTTGCCTCAGCAGGCAAATTCCTCTCTAAATAAGGGTGATTACAACAAAGCTAGTGACAGAACAAAACAAAATGTACCACAGACTGATATGTTCTTAAATGAGATTTTAGGAAAAAAATCAATCTGTGGCAGAAGGAACTACATCAAAGTTTCCAGAGAAAACCTCAGTAGATGTTTTTATGTGGGATCACAGCCATAG 1863 0.3859 MCASHIYLPLLKNATFPLFQDNGNGRMDQENQEKEPKCSEVVDSDFLDPKDPIHQKDIKEVQETIEGVGDKDMDFTSNKMVLDDIELMMGIEDMSTQANGFDKEQKLMNEFELVMKRTEDLICDSELIPLNLGLEEKHNDGGEVGLTDYQVEMEEGEISGDLGIDGNSFDVASADALILQQMEVDEVQKPENVTGNMIYPSKIENQEKETGYDSNSSMVNALQDADNSVQVEPRTSGKKGIACGVEVAISQKTIECQKEYKTKLDNASKKSKRGGNKGKKKNGLFLQFLQCSNIYDIHIGKISNHSYFLFSCLIPKQNWQGDKCQFSHDAVPLTKSKPCTHFARHSCMKGDDCPFDHQLSKYPCTNFVSKGSCYRGDACLFSHQVPTKEDIPTPSNMSRPELSPLLSGNANSSTPLNNNHGSSSVQQNRFTNSAGIHSCTSVEHKVTNTVQKQPTPPKGISFINLAKLSPSLSSLKQGTVTTKESPVQIRTRQDQSAFDKTQNKVEIPKKLPAVTPKGINFLSFGKGSVCSFKSAIPSNVNWENGIKLPQLLSFGLPQQANSSLNKGDYNKASDRTKQNVPQTDMFLNEILGKKSICGRRNYIKVSRENLSRCFYVGSQP 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00855 620 ProSiteProfiles Zinc finger C3H1-type profile. 333 360 IPR000571 GO:0046872
Pumo1g00855 620 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEI 320 581 IPR045124 GO:0003723|GO:0045892
Pumo1g00855 620 SUPERFAMILY CCCH zinc finger 362 388 IPR036855 GO:0046872
Pumo1g00855 620 ProSiteProfiles Zinc finger C3H1-type profile. 363 386 IPR000571 GO:0046872
Pumo1g00855 620 Gene3D - 333 397 - -
Pumo1g00855 620 MobiDBLite consensus disorder prediction 390 427 - -
Pumo1g00855 620 SMART c3hfinal6 361 385 IPR000571 GO:0046872
Pumo1g00855 620 SMART c3hfinal6 333 359 IPR000571 GO:0046872
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pumo1g00855 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00855 - - gmx:100816509 889.412