Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00844 ATGCCACAGAGAAAAGGTTGCAGTTTTCTGAATGAGCCTCGTCTTGTTGCCAGAAAATTCTTGGCACGACCTCAGCATGAGGGTGTCGGGACTGTTGTTAGAAGAAGCATAGGAAGGTTTGAGCTCAAGTACTTTGATCCCTTCCTTGTGTTGGATGAATTCTCAATTACTGCTCCTGCTGGTTTTCCTGATCATCCCCATAGAGGCTTTGAGACAGTCACATACATGTTGCAGGGAGCCATAATGCATGAAGATTTTGAAGGACATAAGGGGACAATAGAAGCTGGTGACTTGCAATGGATGACTGCAGGGAGAGGGATAGTTCACTCAGAAATGCCTGCGGCTCAAGGAACCCAAAAGGGTCTACAGTTGTGGATCAACTTGGCTTCCAAATATAAAATGATTGAACCAAGGTATCAAGAAGTGTTGAGTAAGGACATAGCAGAAGCTGAGGATGATGGTATCAAGGTTAGAGTTATAGCTGGGGAAGCACTAGGGATAAAGTCTCCAATCTACACAAGGACCCCAACCATGTTCTTGGACTTCTCTCTCAAACCTGGTGGTCACTTGCAACAACCTATACCAAAAACTTGGAATGCTTTTATCTATATATTGGAAGGAGAGGGTATCTTTGGAAACATGAAATCTCAGCCTTCAAACTCTCACCATATTCTTCTACTTGGTCCTGGGGATGGCCTAGAGGCATGGAACAAATCTTCTAAGCTCCTTAGGTTCATTTTGGTTGGAGCAGAACCTCTGGGGGAACCTGTGGTGCAATTTGGACCCTTTGTGATGAACACTCAAGAAGAGATTGACCAAACAATTGATGATTTTGAGAACTTTGATAACGGATTTGAGAAAGCAAGACATTGGAGATCTGAAAGCGAAATTAATTAA 897 0.4326 MPQRKGCSFLNEPRLVARKFLARPQHEGVGTVVRRSIGRFELKYFDPFLVLDEFSITAPAGFPDHPHRGFETVTYMLQGAIMHEDFEGHKGTIEAGDLQWMTAGRGIVHSEMPAAQGTQKGLQLWINLASKYKMIEPRYQEVLSKDIAEAEDDGIKVRVIAGEALGIKSPIYTRTPTMFLDFSLKPGGHLQQPIPKTWNAFIYILEGEGIFGNMKSQPSNSHHILLLGPGDGLEAWNKSSKLLRFILVGAEPLGEPVVQFGPFVMNTQEEIDQTIDDFENFDNGFEKARHWRSESEIN 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00844 298 CDD cupin_pirin_C 176 252 - -
Pumo1g00844 298 Gene3D Jelly Rolls 27 279 IPR014710 -
Pumo1g00844 298 PANTHER PIRIN-RELATED 10 295 IPR012093 -
Pumo1g00844 298 Pfam Pirin C-terminal cupin domain 179 283 IPR008778 -
Pumo1g00844 298 FunFam pirin 27 161 - -
Pumo1g00844 298 CDD cupin_pirin_N 33 128 - -
Pumo1g00844 298 PIRSF Pirin 12 292 IPR012093 -
Pumo1g00844 298 Pfam Pirin 33 126 IPR003829 -
Pumo1g00844 298 SUPERFAMILY RmlC-like cupins 14 293 IPR011051 -
Pumo1g00844 298 Gene3D Jelly Rolls 148 253 IPR014710 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00844 Pumo-Chr1 12876866 12880316 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00844 13 289 Calmodulin-binding Proteins AT3G59220 59.498 3.45e-126 360
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00844 K06911 - gmx:100802484 587.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo1g00844 1 12876866 12880316 Pumo1g00844 1 12876866 12880316 ECH
Pumo1g00844 1 12876866 12880316 Pumo9g01829 9 47378826 47382186 PCT