Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00839 ATGGGTATCTCTCGTGATTCCATGCACAAGAGGCGTGCCACTGGCGGCAAGAAGAAAGCTTGGAGGAAGAAGAGAAAGTATGAGCTTGGGAGGCAGCCAGCAAACACAAAGCTATCAAGCAACAAGACGGTTAGGAGGATTAGGGTTCGCGGTGGAAATGTGAAGTGGCGTGCTTTGAGGCTTGATACTGGAAACTACTCTTGGGGGAGTGAGGCTGTGACCCGCAAAACAAGGGTTCTTGATGTGGTGTACAATGCATCCAACAATGAGCTTGTTCGAACTCAGACATTGGTCAAGAGTGCTATTGTTCAGGTTGATGCAGCACCCTTCAAGCAGTGGTATCTGCAGCATTATGGCGTTGACATTGGCCGCAAGAAGAAGAGTGCAGCTTCTGCCAAGAAGGAAGGGGAGGATGGTGAAGCTGCAACTGAGGAGGTGAAGAAGAGTAACCATATTTTGAGAAAATTGGAAAAGCGAAAACAGAACCGGGTGCTTGATCCTCACATTGAAGAACAATTCGGAGGTGGTCGCCTTTTGGCTTGTATCTCATCTCGACCTGGCCAGTGTGGTCGTGCTGATGGATATATATTAGAGGGCAAAGAGCTGGAATTTTACATGAAGAAGCTTCAGAGGAAGAAGGGCAAGGGTGCTGCTTAA 657 0.4825 MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRVLDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRKKKSAASAKKEGEDGEAATEEVKKSNHILRKLEKRKQNRVLDPHIEEQFGGGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAA 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00839 218 PANTHER 40S RIBOSOMAL PROTEIN S8 1 215 IPR001047 GO:0003735|GO:0005840|GO:0006412
Pumo1g00839 218 NCBIfam ribosomal protein eS8 1 199 IPR001047 GO:0003735|GO:0005840|GO:0006412
Pumo1g00839 218 FunFam 40S ribosomal protein S8 162 215 - -
Pumo1g00839 218 FunFam 40S ribosomal protein S8 32 161 - -
Pumo1g00839 218 Pfam Ribosomal protein S8e 5 197 IPR022309 -
Pumo1g00839 218 MobiDBLite consensus disorder prediction 11 26 - -
Pumo1g00839 218 CDD Ribosomal_S8e_like 5 197 - -
Pumo1g00839 218 Gene3D - 162 213 - -
Pumo1g00839 218 Gene3D - 32 161 - -
Pumo1g00839 218 ProSitePatterns Ribosomal protein S8e signature. 11 30 IPR018283 GO:0003735|GO:0005840|GO:0006412
Pumo1g00839 218 MobiDBLite consensus disorder prediction 1 41 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00839 Pumo-Chr1 12847373 12849592 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00839 1 206 Cytoplasmic Ribosomal Protein Gene Family AT5G59240 83.981 1.01e-126 355
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00839 K02995 - gmx:100527325 412.149
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo1g00839 1 12847373 12849592 Pumo1g00839 1 12847373 12849592 ECH