Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00833 ATGGAATCGGATCTTGGCAAGCTCTTCATTGGGGGAATATCTTGGGACACTGATGAGGAACGTCTAAAGGAATATTTTGGGAAATATGGGGAGGTGATAGAGGCTGTGATCATGAGGGATCGTGTAACCGGTCGCGCTCGCGGCTTTGGTTTCGTTGTCTTTGCTGATCCTTCTGTTGCAGAAAGAGTCATTATGGATAAACACATAATTGATGGTCGCACAGTTGAAGCAAAGAAAGCTGTTCCTAGGGATGATCAGCAAAATATAAATAGGCAATCTGGTAGTGCACATGCGTCTCCTGGTCCTGGACGCACGAAAAAGATTTTTGTTGGTGGTTTACCATCAACTATCACTGAAAGTGATTTTAAGAAGTATTTTGATCAGTTTGGTACAATTACTGATGTTGTAGTTATGTATGATCATAATACCCAGAGGCCAAGAGGTTTTGGCTTCATCACCTATGATTCTGAAGAAGCTGTGGATAGAGTTCTTTATAAAACTTTTCATGAACTTAATGGAAAGATGGTTGAAGTCAAGAGGGCAGTTCCCAAAGAACTTTCCCCTGGTCCCAGCCGAAGCCCATTGATAGGATATAACTATGGTTTGACTAGGGCCAGTAACTACCTAAACAGTTATGCTCAGGGTTATAATATGAGTCCAATAGGAGGATATGGAGTCAGGATGGACGGTAGGTTTAGTCCTCTTACTAGTGGTAGAAGTGGGTTTACTCCTTTTGGCAGCACTGGTTATGGAATGGGAGTGAATTTGGATTCAGGATTGAGCCCAAACTTTGGAGGGACTTCCAATTATGGGAGCAATTTAGGATATGGTCGAATTTTTAGTCCTTTCTACAGTGGCAACTCTGGCAGATATACCACTCCTATAGGCTATAGTGGGGGTAATGGGAGAAACGATTCTCTTATGAACTCAACTTCTCGGAATGTATGGGGAAATGGGGGCCTCAATAATGCCAATAACCCTGTGAGCCCCAGTCCTTTCTTAGGATCTGGAAGTGGGGCTTTTGGTGTTTCAATTGGAAATACTGGCACAGGTTGGGGTCCATCCATTCCAGCCCAGGGTGGAGGGGCTGCTTCTGGCTATGGTACTGGGAATAATGTTTATGAAGGTGCAGATAGCAGCTTTGGATTAGGTGGGGGAGGGTATGGAAGAAACAGCAGTACTGGTGTGACTCCATCCTCTACATTTAATGTGTCAACTGGTGGTTATGAAGGATCCTACGGGGACTTATACCGCAGTGGCAGTGGATCGGTTTACAATGACTCTGCTTGGCGTTCTGCTGCGTCTGAGATTGATGGTTCTGGCTCATTTGGTTATGGTCTTGGTGGTATAGCTTCAGATGACCCAGTAAAGAGTTCTGAGGGTTATATTGGAAACTACAATGTTACTAGTAGACAACCTAATAGAGGTAAGATTTTAAGCTACATTCTTGTCTATAAAGAAAATCAGATTATTTATTATAATTTGTTTGCTTTTGATTTCCAATGA 1506 0.4296 MESDLGKLFIGGISWDTDEERLKEYFGKYGEVIEAVIMRDRVTGRARGFGFVVFADPSVAERVIMDKHIIDGRTVEAKKAVPRDDQQNINRQSGSAHASPGPGRTKKIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLYKTFHELNGKMVEVKRAVPKELSPGPSRSPLIGYNYGLTRASNYLNSYAQGYNMSPIGGYGVRMDGRFSPLTSGRSGFTPFGSTGYGMGVNLDSGLSPNFGGTSNYGSNLGYGRIFSPFYSGNSGRYTTPIGYSGGNGRNDSLMNSTSRNVWGNGGLNNANNPVSPSPFLGSGSGAFGVSIGNTGTGWGPSIPAQGGGAASGYGTGNNVYEGADSSFGLGGGGYGRNSSTGVTPSSTFNVSTGGYEGSYGDLYRSGSGSVYNDSAWRSAASEIDGSGSFGYGLGGIASDDPVKSSEGYIGNYNVTSRQPNRGKILSYILVYKENQIIYYNLFAFDFQ 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00833 501 SMART rrm1_1 107 179 IPR000504 GO:0003723
Pumo1g00833 501 SMART rrm1_1 7 78 IPR000504 GO:0003723
Pumo1g00833 501 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Pumo1g00833 501 MobiDBLite consensus disorder prediction 78 105 - -
Pumo1g00833 501 Gene3D - 86 194 IPR012677 -
Pumo1g00833 501 CDD RRM2_Hrp1p 107 184 - -
Pumo1g00833 501 FunFam Heterogeneous nuclear ribonucleoprotein 1 5 87 - -
Pumo1g00833 501 Gene3D - 6 85 IPR012677 -
Pumo1g00833 501 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Pumo1g00833 501 SUPERFAMILY RNA-binding domain, RBD 4 103 IPR035979 GO:0003676
Pumo1g00833 501 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 166 IPR000504 GO:0003723
Pumo1g00833 501 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
Pumo1g00833 501 FunFam Heterogeneous nuclear ribonucleoprotein 1 103 190 - -
Pumo1g00833 501 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 475 - -
Pumo1g00833 501 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 183 IPR000504 GO:0003723
Pumo1g00833 501 SUPERFAMILY RNA-binding domain, RBD 105 193 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00833 Pumo-Chr1 12657740 12661634 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00833 2 185 Eukaryotic Initiation Factors Gene Family AT2G36660 30.102 1.34e-15 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00833 K14411 - gmx:100794390 915.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo1g00833 1 12657740 12661634 Pumo1g00833 1 12657740 12661634 ECH